Trichinella spiralis: Tsp_05578
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Entry
Tsp_05578 CDS
T01609
Name
(RefSeq) putative LigA protein
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4653
Motif
Other DBs
NCBI-GeneID:
10913376
NCBI-ProteinID:
XP_003371911
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MSNCKSEKLDEEEEEKTTITTVIMGRLIEMMRTLSLLFAGSKAEQQSSGGTTLAMRRRTA
TTPPPRDADPILEPDPDADLDVDHDRATEAGKDNGRKKRWLSRGSVESGRRDVEPALERP
VVVDVRGKRASFDVVTADSLGIVDSGPSGRGPRNARSPLGAAPNPARHRHQLRAVRVAVQ
AAGRGPARQEGRQSGAGQGAPRASQSHGRQGRHRRRFGRRGPLRSAEQGVFVRAGPVARG
TLPRAEEADQTGARVQIYGQLDRGRRAPGGGGRGPRFGQGAEFRRPLRSELLSQLRQRPP
ERHGDRIAQRRRDRPPRPVAVHGRFRRLSDRRPGLQRLGTFHSNNYHSPLSAATLDSRWS
PSPSSRGDFHFDDLTLGLEPLQTRRYQHRPGQQLLLFDCSEPTTPRPFNNRCPSPNFYRN
RQKLQVETRPVYTPTAWEERFLGGLGDQWDDGQRVSMARRPLYYGNSLPEWPAESDADSI
SAGGPVDSESWLDLQMQKLKIRREVNDPARRRRREQERLLLEELKQVQHVDGGRGRFGRQ
GAVAGAVAGSKGAPLMDESTASAVSSISNSSPGRANEESHTITITNNNSTTTTTPPHPGF
TRRKTNNANTTIPTSDRDTSPLLDVQSTVGRNRDGLWSSSSSSHRHACYNPHQTNFDHCY
YYSNTLSSTKSASSPKSILKKPKSFPAQPFVSPSYQATEELQSGNYYHDQGEHHHHHQLL
IPVFSTALIHHLI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaattgcaaaagtgaaaaattggacgaagaagaagaagaaaaaacaacaattact
acagtaataatgggacggttgattgaaatgatgcgcactctgtctctcttgttcgcaggt
tccaaagctgaacaacaatcgagcggtggaacaacactggcaatgaggaggaggacggcg
accacgccaccgcctcgcgatgcggacccgatcctggagccggatccggacgccgatttg
gacgtggaccacgaccgcgccacggaagctggcaaagacaacggccgcaaaaagcgctgg
ctgagcagaggttcggttgaaagtggacggcgggacgtggagccggccttggagcgtccg
gtggtggtggacgtgcgcggcaagcgcgcctcgttcgacgtggtcaccgccgacagtttg
ggcatcgtggacagtgggccgagcgggcgtggaccgcgaaacgcgcgctccccactgggc
gccgccccaaacccggcgcgtcatcgacaccaactacgggccgttcgagtcgccgttcag
gccgccggccgtggtcccgcccggcaagagggccgccagtccggcgccggtcagggggca
ccacgcgcgagccagtcccacggtcgacaagggcgacatcgacgtcgatttggtcggcga
ggaccgttacgatccgcagagcagggcgttttcgtacgtgccggcccagtcgctcgagga
acacttccgcgcgccgaagaagccgaccaaactggtgcccgcgttcaaatatacggacaa
ttggaccgtggccgacgagcccctggtggcggtggaagaggaccccgcttcggccagggt
gccgaatttcgacgacctctgcgatccgaacttctatctcaacttcgacaacggccgcct
gagcggcacggcgaccgaatcgcacaacggcgccgagaccgaccaccacgccctgtcgct
gtgcacggacgtttccgtcgactgtccgatcggcgaccagggctccaacgcttgggcacg
ttccattccaacaattaccattcaccgttgtcggcggccaccctggacagccgctggtca
ccgtcaccgtcgagccggggcgatttccactttgacgaccttaccctcggactggaacca
ttacaaacccgaagataccaacaccggccgggacagcagttgctgttgttcgactgttct
gaaccgacgacgccacgcccgttcaacaacagatgcccttcgccgaacttttaccgaaac
agacaaaaacttcaagtggaaacaagaccggtgtacacgcccaccgcctgggaggagaga
ttccttggcggacttggcgaccagtgggacgacggtcaacgcgtatctatggcccgacgg
cccctgtattatggcaattcgctgccggaatggccggccgaatccgacgccgacagcatc
agtgccgggggtccagttgattcggaatcttggctcgatttgcaaatgcaaaaattgaaa
atccgacgcgaagtgaacgacccggcccgacgtcgtcgacgagaacaagaacgtctgctt
ctcgaagagttgaagcaggtgcagcacgtcgacggcggtcgtggcagattcggacgtcaa
ggcgccgtcgcaggggcggtggccgggtcgaaaggcgcgccactgatggacgaatccacg
gcttctgcggtttcttcgatatccaattcttcgcccggtcgggctaacgaagaaagtcac
accatcaccatcaccaacaacaacagcactactacaacaacaccgccgcatcctggattc
acaaggcgcaaaaccaacaacgccaatacgacaattccaacatccgatcgcgacacgtcg
ccattgctcgacgttcaatccacggttggtcgtaatcgcgacggtctttggtcatcatca
tcatcaagccaccgccacgcctgttataatcctcatcaaaccaacttcgaccattgctac
tactattccaacacgctttcttccaccaaatccgcctcttctccaaagtccattctcaaa
aagccaaaatcatttccagctcagcctttcgtatcacccagttatcaggcgactgaagaa
ttgcaaagtggaaattattatcatgatcaaggtgagcatcatcatcatcatcagttgcta
attccagtgttttcgacggccctgattcatcatcttatttga
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