Trichinella spiralis: Tsp_05625 Help Entry Tsp_05625         CDS       T01609                                  Name (RefSeq) PHR domain protein   KO K10693   RCR-type E3 ubiquitin transferase [EC:2.3.2.33] Organism tsp  Trichinella spiralis Pathway tsp04361   Axon regeneration Brite KEGG Orthology (KO) [BR:tsp00001]  09150 Organismal Systems   09158 Development and regeneration    04361 Axon regeneration     Tsp_05625  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:tsp04121]     Tsp_05625 Enzymes [BR:tsp01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.33  RCR-type E3 ubiquitin transferase      Tsp_05625 Ubiquitin system [BR:tsp04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     Tsp_05625 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RCC1 PHR RCC1_2 zf-RING_2 Motif Other DBs NCBI-GeneID:  10913431 NCBI-ProteinID:  XP_003371965 LinkDB All DBs Position Unknown AA seq 3043 aa AA seqDB search MGSYHLTNIPCDRQSADCEQSVLDETRRIPQRLADLIEQSLETPDGCGILYDPRHLLLDR RRQTFSSAVPRLELDELLVPAVPTGLCAYAIARRAVLRRCRAQLEPTPQWKAEPKSVPAD RRRRRPQQPPRPAKVQILEMIAVDCLCNLLVELAGPDSADVGAKALTSLYDLLSRLEPGC LAHELPEPQPALDRLFSLLGKPALLLNANAPLADAAAHCLLALAVARGTTASVLNAADFL LRAGQLRPDRTLERLPENLLPLQRAALDACSRRAGRRCDWNQARLTDRNRMCRIDAPVDG PVRALTSDGRWLYALSATGLLVKFGSGFGDTIRGLPTKSKQTSIRARGAWSTSLSVVDRR LYLRSSGARTRVYSTETLEEQPPNSVHLSSSGTSSNAEVPYCTDGNRLYNFTMDETLCRL TVSSQQLSDSRQYSTARMSWMSLGSEGDGVADTFEQTAEGEPDEVIDLLPARQRRFHLSR DGRVWSTGAAGAGNVERLHTDEPISEILLVSVGERDELIAVGHSGTVYATVDQNLASSTG NRLTNWATRVAGPGRVAACNGSVAWIGLDGRLRLVGRLAGQCAVEAACPLGAISQAVAVG IGNSHGTVVTATGAVYTFGMNQLNQCGRSGERRLAGRRSDTVSAGQTVRPPLRLCAADEH VWLREAATVCNACGLCSRLGARCQFNGRPKGSICACGRGPSSCVKCGTCRSCASECRQPV SGATTTTSALPAGPLTASCLTNVRVRGVSCGQYHSLLSTGDGRVLSFGSNRHGQLGVGDT RERRRGPVRVNLPTNLKPVVQVAAGANHSVCLTNDGQVYTFGKHDSGQLGRRAAGQFWFC IPGPVEAFGSKLGQAFAVRVNASGDQTWVRCRKSLLTVGILRQARLTANKEFFLIFPKPK KHQSAGESQHRCIALDRRRGTVTEVSNQTNALDHGREAIFGPEDRCWCLDPLHPVLWCVD CKIVDAHVPTTAGSEPARQGWWPESTLMNPEFWLPFDREVRVSFQQVALSLLALHCAAVD DDLDRRDRRRSDDVDRPRDHPTDQATVSAVGQVNRFDSFGGGWGYSNQSLDAISYRTDRD VLVHGIGVFGGRGRYTAQLKLIEQEKATADRHEHDDDQLFDYSTLAETKIQQFHYCGADG RSFVKADYGVGFKFRTSELSNNGTDVRFGQIPSILYTLADNDRLGRLVEEDEFEHDRMEL KLWTSERFLYQANETSLDALLNMLARVEHDASETSTTEQQRWLVERACKVATLCLHQYSL LLTVAFNAQSSCQRAQKQTSSSRQEEAETTNSLVPVVERGLKMLFTLVGRFDGRSLIHCQ QSLVDQCCRCFVRCFDLFCPSDALTNALTKSALKGQLRGFGAAMVFRALAARSTPLLLVD QHPDTASTLLCTFETLVSASSNADIPPTGQLVDCLGTAVVVESEHPYESAAKVHCQLVEF DSQVEFLCVEFDPKCGTVQPQDSVQIYTKCSQGFYPVLKCSGRCAVLIKEAYRIAAVEFC TSSSLPTSADVKRLLIDQQQHHHYQLLRKGSSSTAAGLLARYLLQEWYVDVNQCTLTVTG CKKSSRSGRTIKVTLTTRDQLGRQVHCPLAEIELIMIRSQADDYRSRGDVEQPHCPQQQV PYKPTYLNKARYMSLTMMSALRDISAEELRYAHYKNTVHSRTLPNSGGIWIQLERKSNSR LKLNSDHGYCMVQELSGEVYLERHWTLDADPLEQVKYDDQSQRSVPLRPLLVETLRTVFC AMLWHERLIGDAVACSVYVQFRRDELPLLGRRRPGPACVALPMALQLLRELWHQVQSTVL TVVDKHLIGRPAGATERCELCDTPVESAIAHMRVEHPGCGRSSQGRGYDRAGRYTTGWTG NCGDSSSTSLAWYLYCERCRNRRLQQLQKNQQSTPRFYLDYRAAPVEPERLLRNNARFLL QLNPTDPDDDQPLTGEIHLSSGVLVYNANSIINNNNNTHANSDPGPSSIVRPAEEEQWSS AMESTISRGHGGGHGGDGDQSDAADGRFLFCPSATLLQLVHRNRTETDLRGSPVLAFCSS RHDVGRLRQSMLMAVCRARIYQRALRAFNRLLSIRPGAPWTASVVWHVIDAMLDRDDQPN LRSPLLKHPLREIVYAGRMRAAVVDAFHSLLATIGDLLSNCPMEESSRPDAVQLARLCIK AWQVPLSPRDCAVVVSSEVLAAVGRILCWSNDDDNADHDCSESGQVRRAGHLGERVQLQL SSEPALAGSLVDGSADTFWQSGADDHGRPKRLLVRWPPDQVDALLVSLYVDLVRDHQHPV RQVSFYDAVDGRQRRRLKTSLLDGRFVGWVHCAVQGCGLVSVELEGPNANVRLRQLSLVG WPKTTSDPLVAEASACPSRSGELNLTALQADAVELLRLIASLAFDPSEPADGQLQQRVLN VLFDPSAGRSATALRFYLCSQLFQALTVEVHALRGRLKPSFGFVSALVSMLDRIGRRTKA TFEQHRRRSRVLGALAELALFAVAPVQLQAVDTLGVLFEHFDAGLDGGQHALRRLLMLLA KAVQLQVRFEPQARVETLRFNDRPPDAIGWFPDRPCSAAASRSVIELFRQLTAGRSGNQW QLSAQTVLADCVAGLVASAPPAEPVSVLHREAFWLAVASLVLMSDEHWLLRSQSWRSMVT TARDATVFCDNHDDQTTPASVHCAHCHAHYCSQCATVHIREHTKRVRLNWLSLTVDSRTL NTLVDFQPTSTEQPTPAGRLCRFCNAVLSASRSPEEVCDRAECSRLLLEACPKLLPCGHL CGGIAGETRCLPCLRCRDGRGSPVQDAEDLCVICYTDPLGAAPAVQLHCGHVFHHACCVA ALSNPSSSNGPRVLFAFMRCPTCRQPMQHDSLRQLLEPHQRLYDEVLQKALTRLQYDRLQ RCDELTNANSPFYNQPGLFALDRYAYYLCYKCRRPYFGGLAQCQDDYGQLSGYDERELLC GACSDVQQAKVCPRHGTDFLEYKCRYCCSLAVFFCFGTTHFCTSCHDDFQRLLHIPKDQL PHCPAGPQARQLSGDQCPLNVDHPPTGEEYALGCGICRNIRSF NT seq 9132 nt NT seq  +upstreamnt  +downstreamnt atgggctcgtatcatttgacaaatatcccctgtgatcgacaatcggccgactgtgaacag tctgtgctcgacgagacgagacgaattccacaacgtctggccgatttgatcgaacagtcg ctcgagacgcccgacggctgcggtatactgtacgatccgaggcatctgctgctcgaccga cgccgccagacgttcagctcagcagtgccaagattggaattggacgagctgctggtaccg gccgtgccgaccggcctgtgcgcgtacgcgatcgccagacgagcggtgctcaggcgttgt cgagcccagttggaaccgactccgcagtggaaagccgagccgaaatcggtccccgcagac cgtcggcgccgacgaccgcaacagccgccacggccggccaaagtacagattttggaaatg atcgccgtcgactgcttgtgcaacttgttggtcgagctggccggaccggacagtgcggac gtgggggccaaagcgctgaccagcctgtacgacttgctgagccgtctggagcccggatgt ctggcccacgagctgcccgaaccgcagccggcgcttgaccgattgttctccctgctcggc aaaccggcgctgctgctcaacgccaacgctccgctggccgacgcggcggcccactgcctg ctggcgttggccgtggctcgcggcaccacggcatccgtgctcaacgccgccgactttctg ctccgggccggccaactacggccggaccgcaccctcgaacggctgccggaaaatctacta ccactacaacgggccgctttggacgcgtgctcgagacgcgccggccgtcgctgcgactgg aaccaagctcggctgaccgaccgcaaccgaatgtgccgaatcgacgcgcccgtcgacggt ccagtgagggcgctgaccagcgacggacgctggctgtacgcgctgtccgccactggcttg ctggtgaaattcggttctggcttcggcgacacgatccgcggtctgccgaccaagtccaaa cagacgtcgatccgggccagaggggcgtggtcgacgtcgttgtccgtggtcgaccgtcga ctctacttgcgcagtagcggcgctaggacgcgcgtctacagcaccgaaacgctcgaagaa cagccgccaaacagcgtccacctatcaagcagcggcactagcagcaacgcagaagttccg tactgcactgacggcaatcggttgtacaacttcaccatggacgaaactttgtgccggttg acggtcagcagtcaacagttgtccgacagtcgccaatacagtacggccaggatgagctgg atgtcgctgggcagtgaaggggacggtgtggccgatacgttcgaacagaccgccgaaggc gagccggacgaagtgatcgacttgttgccggccagacaacgccgctttcacctcagtcgg gacggtcgggtgtggtcgactggcgccgccggtgccggcaacgtcgaacggctgcacacc gacgagccgatcagtgaaattttgctggtcagcgtcggagaacgggacgagctgatagcc gtcggacacagcggtacggtgtacgcgaccgtcgaccagaatttggccagctcgaccggc aaccgactgaccaactgggcgacacgagtggccggccctggtcgtgtggccgcgtgcaat gggtccgtcgcctggatcggtctcgacggacggctgcgcttggtcggtcgtctggccggt cagtgcgcggtcgaggcggcctgtccgctgggcgccatcagccaagcggtcgcggtcggc atcggtaacagccacgggaccgtggtcaccgcaaccggcgccgtctacacgttcggcatg aaccagctgaatcagtgcggtcggtccggtgagcgccgactcgccggccgacggtcggac accgtcagcgccggccagacggtccggccgccgttgcgtctgtgcgccgccgacgaacac gtctggctgcgcgaagcggctaccgtctgcaacgcgtgcggtctgtgttcacgacttgga gcgcggtgccagttcaacggtagaccgaagggttcgatctgcgcctgcgggcgtggtccg tccagttgcgtcaagtgcggcacttgtcgatcgtgcgcatccgagtgccgccaacccgtc agcggcgctacaactactacgtctgcattgccggctggaccactgaccgccagctgtttg accaacgtccgcgtgcggggcgtcagctgcggtcagtaccacagtctgttgagtaccggt gacggtcgtgtgctgtcgttcggctcgaatcgtcacggtcagctgggtgtgggcgatacg agagagcgccgccgcggtccggtacgggtcaatttgccgacaaacttgaagccagtggtg caggtggccgcgggtgccaatcacagcgtgtgcctgaccaacgacggtcaagtgtacacg tttggcaagcacgactccggtcagctgggacgaagggcggccggccaattttggttctgc attccgggtccggtcgaagcgttcggctccaagctcgggcaagcgttcgccgtgcgcgtc aacgcgtccggtgaccagacatgggttcggtgcagaaaaagtctgctgaccgttggaatt ctacgccaagctcgactgaccgccaacaaagagttctttctcatttttccaaaaccgaag aaacaccagtcggccggcgaatcgcaacaccgttgcatagcgctggaccgtcgtcggggt accgtgacagaagtcagcaatcagacaaacgctctcgaccatggccgagaagcaattttt ggaccggaagatcggtgctggtgtttggatccgttgcatccggttctctggtgcgtcgac tgtaaaattgtcgacgcccatgtgcccaccacagctggttcagagccggctagacagggc tggtggccagagtcgacgttgatgaatccagaattttggctaccgttcgaccgtgaagtg cgggtaagtttccaacaagtagcactgagcctgctggcgctccactgcgcagcggtcgat gacgacttggatcgccgtgatcgacgacgatcagacgacgtggaccgaccgcgagatcat cccactgaccaggcaacggtcagtgcagttggtcaagtgaatcgattcgacagtttcggc ggcggttggggctattcgaatcagtcgctcgacgcgatctcctaccgcactgatcgagac gtgcttgtccacgggatcggggtcttcggcggtcggggccgttacacggctcagctgaaa ctgatcgaacaggaaaaagcgacggctgaccgacacgaacacgacgatgaccaactattc gactattcgacattggccgaaactaaaatacaacaattccactactgcggtgccgacggt cgatcgtttgtaaaagccgactacggggttggtttcaaatttcgaaccagcgaactgtcg aacaacggaaccgatgtccgttttggtcaaataccgtccattttgtacacgttggccgac aacgaccgacttggacgactggtcgaagaagacgaattcgaacacgatcgaatggaattg aaattgtggacgagcgaacgttttctgtaccaagcgaacgagaccagcttggatgcgttg ttgaacatgctggccagggtcgaacatgacgcttctgaaacttcgaccactgaacaacaa cgttggttggtcgaacgggcctgcaaagtcgccacgctgtgtcttcatcagtacagcctg ctgttgaccgttgctttcaatgcacagtcgtcgtgtcaacgtgcccaaaaacagaccagc agcagtcgacaagaggaagccgaaacgacgaattcactggtacctgtggtggaacgtggt ttgaaaatgttgttcactttggtcggtcgattcgacggacgatcgttaatccactgccaa cagagtctggtcgatcagtgttgccggtgctttgttcggtgtttcgatttgttctgtccg tccgacgcgttgaccaacgccctcaccaaatccgcgttgaaaggtcaactgcgaggattc ggcgccgcaatggtgtttcgagctctggcagcccggtcaactccactgttgctcgtcgat cagcatcccgacacggcgtcgactttgctctgcacgttcgaaaccctagtgtcagcgtcg tccaatgctgacatcccaccgactggtcagttggtcgactgcttgggcacggccgtcgtg gtcgaaagtgaacatccgtacgaaagcgccgccaaagttcactgccagctggtggaattc gactcgcaagtggaatttctgtgcgtcgaattcgacccgaaatgcggtaccgttcaaccg caggacagtgtgcaaatttacacgaaatgcagtcaaggtttttacccggttctgaagtgc agtggccgttgcgctgtgctcatcaaagaagcgtaccgaattgccgccgtggaattttgt acttcgtcgtcgttgccaacatctgccgacgtcaagcgtctactgatcgatcaacaacaa caccaccactaccaacttcttcgcaaaggttcgtcgtccaccgccgctggtctgttagca cgttacctgctccaagaatggtacgtcgacgtcaaccagtgcacgttgacggtcacaggt tgcaaaaaatcgtcgcgcagtggacgaacgatcaaagtgaccctgaccacacgtgaccag cttggtcgacaagtccactgtcccttggctgaaatagagttgattatgatccgcagtcaa gccgacgattaccgatcgcgaggcgacgtcgaacagccccactgtccacaacagcaggtt ccctacaagccaacctatctgaacaaggcgcggtacatgagtctgaccatgatgagcgcc ctgcgggacatatcagccgaagagttgcgttacgcgcactacaaaaataccgtgcacagt cgaacattgccgaacagcggcggcatttggattcaactggaacgaaaatccaattcccga ctgaaactgaactcggaccacggctactgcatggtgcaagagttgtccggcgaagtctac ctggaacgacactggaccctggacgcagatccactggaacaagtcaagtacgatgatcag tcgcaacgcagcgtcccgttgcgcccactgctggtcgaaacactgagaacggtgttctgc gcaatgctgtggcacgaacgactcatcggcgacgcggtcgcctgctccgtctacgtgcaa ttccgtcgtgacgagctgccgttgttgggccggcgccgtcctggaccggcgtgcgtcgcg ctgccgatggctttgcaactgttgcgagaactgtggcaccaagtccagtcgacagtgctg accgtggtcgacaagcatctgatcggtagaccggcgggcgcgacggaacgctgcgaactc tgcgacacgccagtcgaatcggcaatcgcgcacatgcgagtcgaacatccgggctgcgga cggtcgtcccaagggcgtggctacgaccgggcaggtcgttacacgaccggctggactggc aactgcggtgacagcagttccacctccttggcttggtatttgtactgcgaacgatgtcgc aatcggcgactgcaacagctgcagaagaaccaacagtctacacctcgattttacctcgac tacagagccgcacccgttgaaccggaacgtctgctgcgcaacaacgcacgcttcttgctg cagctgaaccccaccgacccggacgacgatcaaccactcactggtgaaattcacttgtca agtggtgttctcgtgtacaacgctaatagcattatcaacaacaacaacaacacgcacgcc aactcggatccgggtccgtcgtccatcgtccggccagctgaggaagaacagtggtccagc gcgatggagtcgaccatatcgcgtggtcatggtggtggtcacggtggtgatggcgatcaa agtgatgcagccgacggtcgtttcctgttctgcccgtcggcgactctgcttcagttggtg caccgcaatcgtaccgaaactgatctgcgtggttcgccagtgctggcgttctgttcgagc agacacgacgtcggccgcctccgacaaagcatgctcatggccgtttgccgggcacgcatt taccaacgggcgttgcgggcgttcaaccggctgctgtcaattcgacccggcgccccttgg accgcttccgtggtctggcacgtgatcgacgcgatgctggatcgcgacgatcagccgaac ctgagatcaccgttgctgaagcacccgctccgggaaatagtgtacgcgggcaggatgcgc gccgcggtggtcgacgcgttccattctctgctggcgaccatcggcgacttgctgtccaac tgtccgatggaagagtcgagtcgaccggacgccgtccagttggcgaggctgtgcatcaaa gcttggcaagtgccgttgtcaccacgagactgcgccgtggtggtcagttcggaagttttg gcggcagtcggcagaattctgtgctggtcgaacgacgacgacaacgctgaccacgactgc tccgagtccggtcaagtgcgccgtgccggtcatctcggcgagcgcgtccagctccaattg tccagcgaaccggcgctggccggcagtctggtcgacggctcggccgacacgttctggcaa agtggcgccgacgaccacggacgaccgaaacgactgctcgttcgctggccccctgatcaa gtggacgcgttgctggtcagcttgtacgtggatttggtccgcgatcaccagcatccggtc aggcaagtgtccttctacgacgcggtcgacggccgacagcgcagacgtctcaagacatcc ttgctcgacggtcgtttcgtcggctgggttcactgcgcggtgcagggttgtggtctggtt tcggtcgagctcgaaggtccaaatgcgaatgtccgtctgcggcagctgagcttggtcggc tggcccaaaacgacctcggacccactggtagccgaagccagcgcctgcccatctcggtcc ggcgagttgaacttgaccgcgcttcaagccgacgcggtcgaactgctgcgtctgatcgct tcgttggctttcgacccgtcggaaccggccgacggtcaactgcagcagcgcgttctgaac gtgctgttcgacccgtcggccggacgatcggccaccgccctgcgcttctacctctgctcg cagttgttccaagcgctgacggtcgaagtgcacgcgctgcgcggtcgactgaagccgagt ttcggcttcgtgtcggcgttggtgtccatgctggaccggatcggccgtcggacgaaagcc acgttcgagcagcaccgccgtcggagtcgggtactcggcgccctggccgagctggcgctg ttcgccgtggcgccggtccagctgcaggcagtcgacacgctcggcgttctgttcgaacat ttcgacgccgggctggacggtggtcagcacgctctgcgccgtctgctgatgcttctggcc aaggcggttcagcttcaggtgcgcttcgagccgcaggcccgtgtcgagactttgcgcttc aacgaccgaccgccggacgccatcggctggttcccggaccgaccctgttcggcggcggct agtcgttcggtgatcgaactgttccgtcagctgacagcgggtcgaagtggaaaccagtgg cagctgagtgcgcagactgttctggccgactgcgtggccggcttggtcgcctcggccccg cccgccgagccggtctcggtactgcaccgcgaggcgttctggctggccgtcgcttctctg gttctcatgtccgacgaacactggctgcttcggtcacagagctggcgatccatggtgacc actgcgcgcgatgcgaccgtattctgcgacaaccacgacgatcaaaccactccagcttcg gtccactgcgcccactgccacgcccactactgcagtcagtgtgcaacggttcacatacgt gaacacacgaaacgtgtgcgcttgaactggctgtcgttgactgtcgacagtcgcacgttg aacactctggtcgactttcaaccgacttccactgaacagccaacgcccgccggtcgactg tgtcgattctgcaacgcggtgctgtcggcgagcagatcgcccgaggaggtctgcgaccgt gccgagtgcagtcgcctgctgctggaagcgtgtccgaaactgctgccctgcggtcatttg tgcggtggaattgccggcgaaacgcgctgtcttccctgcctgaggtgccgggacggtcgc ggttcaccagtgcaagatgccgaagacctgtgcgtcatctgttacacagatccgctcgga gcggctccggccgtccagctccactgcgggcacgtgttccaccacgcctgctgcgtggcc gcgttgagtaatccgtcgtcgtccaacggtccccgggtgttgttcgcgttcatgcgctgc ccgacatgccggcagccgatgcaacacgattcgctgcgccagctgctcgaaccacaccag cggctgtacgacgaagttctccagaaggcgctgaccaggctccagtacgaccgtttgcaa cggtgcgacgaactgaccaacgccaacagtccgttctacaatcagcccggcttgttcgcc ctcgaccgctacgcctactacctgtgctacaagtgccgtcgaccctacttcggcggttta gcccagtgccaagacgactacggccaattgtccggctacgacgaacgcgaactgctctgc ggagcttgttccgacgtgcagcaggcgaaagtttgccccagacacggaaccgacttcctc gaatacaaatgccggtattgttgctcgttggccgtattcttctgcttcggaaccacgcac ttctgcaccagctgccacgacgactttcaacgtcttctgcacatacccaaagaccagctg ccccactgtccggcaggaccacaagcccgtcaactgtcgggcgaccagtgtccactgaac gtcgaccatccgccgaccggagaagagtacgccctgggctgtggtatttgtcgcaacatt cgttcattctga

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