KEGG   Trichinella spiralis: Tsp_05685
Entry
Tsp_05685         CDS       T01609                                 
Name
(RefSeq) flap endonuclease 1a
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
tsp  Trichinella spiralis
Pathway
tsp03030  DNA replication
tsp03410  Base excision repair
tsp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tsp_05685
   03410 Base excision repair
    Tsp_05685
   03450 Non-homologous end-joining
    Tsp_05685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsp03032]
    Tsp_05685
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_05685
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tsp04147]
    Tsp_05685
DNA replication proteins [BR:tsp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Tsp_05685
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Tsp_05685
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Tsp_05685
Exosome [BR:tsp04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Tsp_05685
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-GeneID: 10913490
NCBI-ProteinID: XP_003372024
LinkDB
Position
Unknown
AA seq 381 aa
MGIKGLSKVIADFSPNAITERTMNSFFGRTIAIDASMSLYQFLIAIRQDGSQLSAESGET
TSHLIGMFYRTIRMVENGIKPVYVFDGKPPVLKSDEVHFLICTFVSLDKRTERRTEAEEK
YADAVQAGDSEAINKFSRRLTKVSKEHVDECKRLLKLMGIPYIEAPCEAEAQCAALVKAK
KVFAAATEDMDTLTFGSDIMLRYLTFSEAKKMPIKEFRFDDVLHGLNMTHEEFVDFCILL
GCDYCPTIKGVGPKKAYDLIKQYRNLEVIVEKLDKKKYPIPENWQYKAVRKLFLEPEVID
CNTIELTWKDPDEQGLITFLVNEKNFGHNRVVNGCAKLLSARRSSTQGRIDSFFTVLVTK
KKRPADEGSSKATAKKGKGKK
NT seq 1146 nt   +upstreamnt  +downstreamnt
atgggaatcaaaggactgagtaaagtaattgccgatttttcgccaaatgcgatcacagaa
cgaacgatgaattcattttttggcagaacaattgccattgatgcgtccatgagcctttat
caatttttgatcgctattagacaagacggttctcagcttagtgcagaatctggtgaaacg
accagtcatttgattggtatgttttatcgaacaattcgaatggtggaaaatggcatcaag
ccagtgtacgttttcgacggaaagccgccagtgttgaaatctgacgaggttcatttttta
atatgcacatttgtatcgctcgacaaacgcactgaacgtcgtacagaagctgaagagaag
tatgcagatgcagttcaagcgggagattctgaagcaataaataaatttagtcgtcgttta
accaaagtttccaaagaacacgtcgacgaatgcaaacgtcttctcaaactaatgggaatt
ccctacattgaggcaccatgcgaagcggaagcacaatgtgcagctctggttaaagcgaaa
aaagtgtttgcagcagctacagaagacatggatacgttaacatttggaagcgacataatg
ttacgctatttgacgtttagcgaggcgaaaaagatgccaattaaagaatttcgttttgat
gatgttttgcacggtttgaacatgactcatgaagagtttgtggacttttgcatactgctt
ggttgcgactattgtccaacaattaaaggcgtcggaccgaaaaaagcgtatgatttgatt
aagcaatatcgaaatttggaagttatcgtagaaaagttggataagaagaaataccctata
ccagaaaattggcaatacaaagctgtacgaaaactttttctcgaaccagaagttatcgac
tgtaatactatagagctgacttggaaggatccagacgaacaaggactaatcacatttttg
gtcaatgaaaaaaatttcggtcataatcgtgtagttaacggttgtgctaaattgctctca
gctcgtcgttcatcaactcaagggcgtattgatagcttcttcacagttttagttaccaag
aaaaagcgtccggccgatgaaggtagcagtaaagcaacggctaaaaaaggaaaaggcaaa
aaatga

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