Trichinella spiralis: Tsp_05739
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Entry
Tsp_05739 CDS
T01609
Name
(RefSeq) zinc phosphodiesterase ELAC protein 2
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsp03016
]
Tsp_05739
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
Tsp_05739
Transfer RNA biogenesis [BR:
tsp03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
Tsp_05739
Prokaryotic type
Tsp_05739
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_4
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
10910376
NCBI-ProteinID:
XP_003380003
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MPPSPESTSKRARLYRTSYTGPATAYFEVIVIRFLWIIQSGCHGRGKCLILFTTSSVYLF
NSPEGTERLFCEHGVKNSRLNHVFYTRACWDNVNGLNGLILSLRKAGCAELHLHGAQAIT
KIVRGAEQVSDWSGPPLNVIEHCDCNDSHFEDDSIQVQYLPLVGGEECSEEKTDERRPTF
AYFCRIKQKSPKLLLEKCAQLNVPVGPLLGRLQAGCDVQLDDGTTVRSADVLEPATPCPT
FVVVECPRGKEPPKRSTIERLLRQGETLDAVVHLTDAQVYETDFYQRWMVELDGKTCHVV
LNEAVAPVRPHSEAIYRFSVQLNRVHSTIFPLLCTHDQATVADTRSPLLLTTGRQSVVAV
AGEPWLRFNLRPEPGSVYKCAPSFDRATILEPIDGQPLVVDELRRFQERLSGQIGDQIDQ
YPAVTFLGTSSASPVKTRNVSALLIHLDDGSAVLCDCGESTYSQAYLRYGADGIGPLLRS
VKLIFISHMHGDHFFGLPTFLRRRFRAYQDCQLEYEPVFLVAPQNLLHILTMFESFSGSV
KQLCKTILTHRLHPLTEQSQKHLQEAMLSLNVKRLEFVPVAHPMGAHGLVLTTVGNKTVV
YSGDTRPCPALVSAGQGADLLIHEATMEDDLAQEAVDKKHSTISEAIAVGRAMGAGFTLL
THFSGRYNKLPLVDERHCSESIGLAFDFMRVSLAEIMEVQSGITEMELDPVLNNNNSSSS
ALCSGEAVANLSTNNDGQWREEKWTGSLDVGRTTSKVSKNQLKKMKKRERWLLSRQARRQ
EQAAKRKQRKVEARLRGEPSSAGGRSKRRLLKLSSMELSNCRQRVAVDMSFDDLMNERDL
CKALNQLAQCYAVNRRARNPLQFHVVNFRGISRVNFDNIPGNNNWDVLLSGDDYEQLFGR
WNVVYLTSESPNVVHELDESKVYIIGGLVDHNHLKGRCLELAEQRQVAHARLPIDEHVKM
NARRVLSINHVFEILLRYTETKSWQVAIETVVPKRKLLQTQQQELLPNNTAIRTSGETNN
GHNTSSDD
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgccaccatcacctgaatcaacgagcaagcgtgctcgtttatatcgcacatcgtacact
gggccggcaactgcgtatttcgaggtgattgttattcgctttctttggatcatccaaagt
ggctgtcatggtcgcggaaaatgtctgatcttgttcaccacttcgtcagtttatttgttc
aattcacccgaaggtacggaacggctgttctgcgagcacggtgtgaaaaatagtcgtctg
aatcatgttttctacacgcgcgcgtgctgggacaacgtgaacggtttgaatgggttgatt
ttgtcgttgcgcaaagccggatgcgcggagcttcatctgcacggtgcgcaggcaattacg
aaaattgtccgaggagctgagcaagtttccgattggtcaggtccgccgttgaatgtgatc
gaacactgcgactgcaatgattcacatttcgaagacgattccattcaagtacagtatttg
ccgttggttggcggtgaagaatgcagcgaagagaagacggacgagcgtcggccaacgttc
gcctatttttgccgaatcaaacagaaatcgccgaaattgttgttggaaaaatgtgcgcaa
ttgaatgtgccagttggtccgttgttgggtcgcctgcaagccggttgcgatgtccaactg
gacgacgggacgacagtgcggtcggcggacgtgttggaaccggcgaccccgtgcccgacg
ttcgtggtcgtcgaatgcccgcgtggcaaagagccgccgaagcggtctacaatcgagcgg
ttgcttcggcagggcgaaacgttggacgcggtggttcatttgaccgacgcccaagtctac
gagacggatttctaccagcggtggatggtggaattggacgggaaaacttgccacgtggtt
ttgaacgaagccgtggcgccggtcagaccccattcggaagcgatataccggttcagcgtc
cagttgaaccgggtccattcgaccatattcccgcttctttgcacgcacgaccaggcgacc
gtcgccgacactcgatcgccgctcctgttgaccaccggccggcagtcggttgttgccgtg
gccggcgaaccgtggcttcggttcaacttgcgacccgagcccggttcggtgtacaaatgc
gctccttcgttcgaccgtgcgacaatattggaaccgatcgacggtcaaccgttggtagtt
gacgagttgcgccgttttcaagaacgtctttccggccaaattggcgaccaaattgaccaa
tatccggcggtgacttttttgggcacgtcgtcggcgtcgccggtgaaaacgcgcaacgtg
tcggcattgttgatccacttggacgacggttcggccgtgttgtgcgactgcggcgagtcg
acttacagtcaggcatacttgcgctacggcgccgatggaattggaccactgctcaggtcg
gtgaagttgattttcatcagtcacatgcatggtgatcatttttttggtttgcccacattt
ttgcgacgtcgttttcgggcttatcaagattgtcaacttgaatacgaaccggtttttttg
gtagcacctcaaaatttgctgcacattttgaccatgtttgaaagtttttccggttcagtg
aaacaattgtgcaaaacaatattgacgcaccgtttgcatccgttgaccgagcagtcgcaa
aaacatttacaagaagcaatgttgtcgttgaatgtgaagcggctcgaattcgtgccggtg
gcgcatccgatgggcgcccacgggcttgtgctgaccaccgttggtaataagacggttgtc
tattcgggcgacacgagaccgtgtccggcgttggtcagcgccggacagggagcggatttg
ttgatccacgaagctacgatggaagacgatctcgcccaagaggcggtcgacaaaaagcac
agcactatcagcgaagcgatcgcggtcggtcgagcgatgggggccggttttacgctgttg
acccacttcagcggtcggtacaacaaattgccgctggtcgacgagcgccattgcagcgag
tcgatcggcttggctttcgactttatgcgtgtcagtttggccgaaattatggaagtgcag
agtggaataactgaaatggaattggacccggtattgaacaacaacaacagttcatcatcg
gcgctgtgttccggtgaggccgtggcgaacttgtcgaccaacaacgacggccaatggcga
gaagagaaatggacgggcagtttggacgttggcaggacgacttcgaaagtgtcgaaaaat
caactgaaaaagatgaaaaaacgcgaacggtggctgttgagccgccaagctagacgccaa
gagcaggcggccaagaggaagcagcgcaaagtcgaggcgcgtcttagaggcgaaccgtcg
tcggccggcggcaggtcgaaacgcagattgttgaaactcagctcgatggaactgtccaac
tgtaggcagcgcgtcgccgttgacatgtcgttcgacgacttgatgaacgagcgcgacttg
tgcaaagcgttgaaccaactggctcagtgttatgcggtgaatcgtcgtgccagaaatcca
ctccaattccacgtggtcaacttcagaggtattagcagggtgaatttcgacaacatcccc
ggcaacaacaactgggatgttctgttgagtggagacgattatgagcaattgttcggccgg
tggaatgtggtctatttgaccagcgagtcgccgaacgttgtacacgagctggacgagagc
aaagtgtacataattggcggcctggtcgatcacaaccatctcaaaggacgttgcttggaa
ttggccgaacaacgccaagtggcccacgcccgtttgccgatcgacgaacacgtcaaaatg
aacgccagacgtgtgctgagcatcaatcacgtgttcgaaattctgctgcgctacacggaa
acgaaaagttggcaagtggcgatcgagactgtggtgcccaagagaaaattattgcaaaca
caacaacaagaactgctaccaaacaacactgccatccgaacgtctggtgaaactaacaat
ggtcacaacacgtcatcggacgactga
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