Trichinella spiralis: Tsp_05866
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Entry
Tsp_05866 CDS
T01609
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
tsp
Trichinella spiralis
Pathway
tsp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Tsp_05866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_05866
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_05866
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
Tsp_05866
RNA polymerase I system
Tsp_05866
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
Tsp_05866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW
KOWx_SPT5
KOW7_SPT5
KOW6_SPT5
KOW1_SPT5
RsgI_N
GPKOW_C
DUF4438
Spt5_N
pAdhesive_17
Motif
Other DBs
NCBI-GeneID:
10911014
NCBI-ProteinID:
XP_003380154
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MTEDEINQYFKNKYSRSYNTSASIDESIYDDITQKGLLPCASDPNLWYIKCRIGEEKTTG
MLLMRKFLAYQNTENPLLIKSIIVKEGLKGMIYIEAYKMPHVMRAIEGVSTLYKNNVRMV
PIKETPDVFKVIKDTSALKPGVFVRVKRSVYKDDIAQIFTSAIAIAERCCDKLDKKVLVD
WVDLSQKSIHLKLIPRIDYTRMRGAMRSAGETDAPKKRKARPPAKLFDLDAVRAIGGEVG
KDGEFYVFEGNRYSRQGFLYKSMAISAVEANNVKPIANTLVREQHGQFVTGDVVEVVEGE
LSNLRGKVTSVDGDTIHVQTAIPELKGTLKFNAHELRKHFVVGDHVKVISGRYEGDTGLI
VSVNSNYVILMTDLSMSEIQVLPKDVQLCRDVSTGVHSSGTFQYHDLVMIDAETVGVIVQ
MEREYLHVLNQNGKVVRMKHQSLYGKKSSKYAVALDCEGNNIGVGDVLKVIDGPNKGLQG
EVKHLYRSYLFMYSTTHHKDGGMFVCRARHVLTLASSPRGVLRSPMHPSGGGAAARGQMS
TPYYIGRGRVCRDYGAIGKSVRIIKGPMKGYHGMVKDATESTAQVELHATCKTISVERSH
LEVLSGNGEPSQAFQPYKSMRPPDGSQTPYADMGKTPRYGPHTPMYGSQTPMHEGGRTPY
YGSQTPMHDGSRTPSHANAWDPTVPNTPARRGIPDDDFEYEASPVTKYGGPASVSPATPG
YSVDTPLGVPYTPGDLFSENSSPFLMQSANSPLLGSYAGSSVGESPSLQPSTSGLSLFST
GSRTSLSTPSSSITSDSPKLSFDGNLGEWVEPNMEVVIRDYPVDRMLNGRVGVVQAVTGD
SCTIFIPSLEKAVSVYVEHLEPSKPLQGDKVKIIRGEDVDSTGLVISIDGVEGVVKTDSD
EIRLVNMAFLCKMVS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagatgaaataaaccagtacttcaagaataaatacagtcgaagttataatact
tctgcttcaattgacgagagcatctatgatgatataacacaaaaagggcttttgccttgt
gcgtcggatcccaatttgtggtatatcaaatgtcgtattggcgaagaaaagacaacaggc
atgcttttaatgcgtaaatttcttgcctatcaaaatactgagaatcctttgcttatcaaa
tcgattattgtcaaagaaggtttgaaaggcatgatttatattgaagcttacaaaatgcct
catgtgatgagagctattgaaggagtttctacattatacaaaaataatgttcgcatggtc
ccaataaaagaaacgcccgatgtatttaaagttatcaaagatacatctgctctaaagcca
ggcgtgttcgttcgtgtaaagcgttcagtttacaaagatgatatagcacagatattcact
tctgcaattgcaattgcggagcgttgttgtgacaagttggataagaaagtactagttgat
tgggtagatttatctcaaaagtcaatacatttaaagttgattcccaggatcgactatact
cgaatgcgcggtgcaatgcgctctgcaggagagacggatgcacccaagaaacgtaaagca
cgaccaccagcaaagctttttgacttggacgctgtgcgagcaattggtggagaagttggt
aaagatggtgaattttacgtatttgaaggcaatcgttatagtcgacaaggatttttgtac
aaatcaatggcaattagtgcagttgaagcgaataacgtgaagccgatagcgaatacgttg
gttagagaacagcatggtcagtttgttactggagatgtagtagaagtggtggaaggtgaa
ctttcgaatttgcgtggtaaagtgactagtgttgatggagatacgattcacgtacaaact
gcaataccggaattaaaaggtacactaaaatttaatgcacatgaattgcgaaagcatttc
gtagttggcgatcatgtgaaagtgatttccggtcgatatgaaggcgatacaggcttaatt
gtttctgtcaactcaaattatgtgattttgatgactgacttgagcatgtctgaaatacaa
gttttgccaaaagatgttcaactgtgccgtgatgtgtctacaggtgttcattccagtggc
acttttcaatatcatgatttggtgatgattgatgcagagactgttggtgttattgtgcaa
atggagcgtgaatatcttcatgttttaaatcagaatggcaaagtggtacgcatgaagcat
caatctttatatggaaagaaaagttcaaaatacgctgttgcgctagattgtgaagggaac
aatattggagtaggtgatgtgttgaaagttattgacggtccaaataagggtttacaaggc
gaagtgaagcatctgtaccgatcatacttgtttatgtattcgacaactcatcataaagat
ggcggcatgtttgtttgtagagctcgtcatgtgttaacacttgcatcttctcctcggggc
gtacttcgtagccctatgcatcctagtggcggcggtgctgcggcacgtggccaaatgtcg
acaccatattacattggacgtgggcgtgtctgtcgcgactacggtgccattggcaagagt
gttagaattatcaaaggaccgatgaaaggttatcacggaatggttaaagacgctacagaa
tctactgcacaggttgaattgcatgctacatgtaaaacaattagtgtggaacgaagtcat
ttggaagtgttgagtggtaatggtgaaccttcgcaagcgtttcaaccatacaagtctatg
cgaccaccagatggcagtcaaactccctatgctgacatgggcaaaacaccaagatatggt
cctcacactccaatgtatggctcgcaaacgccaatgcacgaaggcggtcggaccccatat
tacgggagtcaaacaccaatgcacgacggtagccgaactccgagtcatgccaacgcttgg
gatccaactgttccaaatacgccagctagacgtggtatacctgatgatgactttgaatat
gaggcaagtccggtgacaaaatatggaggaccggcatcggttagcccagctactcctggg
tactctgttgacactccattaggtgttccttatactccgggcgacttgttctctgaaaat
agcagtccattcttgatgcagtcggcaaatagtcctttattgggatcctatgctggaagt
tctgttggcgaaagtccatcattgcaaccaagcactagcggattgtcacttttcagtaca
ggttctcgtacttcattgtcaactccttcttcgtcgattacttctgattctccaaaacta
agttttgacggaaatcttggcgaatgggtagagccaaacatggaagttgtgattcgcgat
tatcctgtcgatcggatgctcaatggtcgcgttggagtggtgcaagctgtcacgggagat
tcgtgcacaatattcattccatctctggagaaagctgtttcagtttacgttgagcatctt
gaaccatcaaagccgttgcaaggagacaaggttaaaattattcgtggtgaagatgttgat
tctactggattggtaatctcaattgacggagtcgaaggagtggtgaagacggattcagat
gaaattcgtttggtcaatatggccttcttgtgtaaaatggtctcttaa
DBGET
integrated database retrieval system
