Trichinella spiralis: Tsp_05924
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Entry
Tsp_05924 CDS
T01609
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
KO
K05038
solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9
Organism
tsp
Trichinella spiralis
Pathway
tsp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
Tsp_05924
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tsp02000
]
Tsp_05924
Transporters [BR:
tsp02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
Tsp_05924
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
10911179
NCBI-ProteinID:
XP_003380237
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MLSCLGFAVGLGNIWRFPYLCGRNGGAAFLLIFIIFIIFGGVPMALLELGLGQYSSLASH
QLFEAFCPLFSGLGYVMILTSFLTSLYYNVVIAWAIYYFAASFSSQLPWKTCNNPWNTIA
CYDKSMDEFCTQLNLTYWKGQCWNNTADHEQQFDAVVNWSERTNPAQEYFDNNVLHLSKG
IDHLGGLSLELSMCLLAAWVLVFAILIKGVRSAGKVIYFTATVPYMLLLALLVRGATLPN
AIEGIKFFIIPDFSRLADSAVGGMELQMLVVWGDAAVQVFFSMSVGAGGLTTLSSYNELD
NNIFRQAYLFDLPIIETLSLFVLLANFVFGCLMLQNGKAHDAMHGSASTNATTSFRQHFP
NAIVVGYFCNYAWQHIYKLAFRLCCVQHIRLYGRQSVESVATAGPGLLFVTYPYALTHLP
LSPVWSALFFFTVILMGIDSQIVLVEVVITAFKDQYPKLREPKIRVCAVACTCAISYLIG
LLMCTGGGAYILNLLDTFAGGWPLLLQCLLEVIIVLPTGCRFDCFSELTRSSHDGICHQM
VEALVSLFCL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgctctcatgtctcggctttgccgttggcttgggcaacatatggcgttttccgtatttg
tgcggccgaaatggcggagctgcctttctgttaattttcataatattcatcatctttggc
ggtgtgccgatggcgctgttggaacttggcttgggccagtattcatctttggcgtcacat
caactgtttgaagctttttgtcctctattttcaggtcttggctacgtgatgattttaact
tcatttctgacatcactgtattacaatgttgttattgcttgggcaatttattattttgcc
gcatcattttccagtcagctaccttggaaaacttgcaataatccgtggaatactatagct
tgttacgataaatcgatggatgaattttgtacgcaactgaatcttacctattggaagggt
cagtgttggaataataccgctgatcatgagcaacaattcgatgcagtggtcaactggtca
gaacgaacaaatccagcgcaagaatactttgacaacaatgtattacatctgagcaaaggt
atcgatcatttgggtggtctgagcttagagttgtcgatgtgcttgctggcagcttgggtt
ttagtatttgcaatcttgatcaaaggtgttcgatcagctggaaaggtgatttatttcacc
gctaccgtgccgtatatgctgctgctggctttgttggtacgcggtgcaacactgccgaac
gccatagaaggaatcaaatttttcatcataccagacttcagccgcctcgctgattcggcg
gtgggtgggatggaattgcaaatgttagtagtctggggcgatgcagctgtgcaagtgttc
ttttcgatgagcgtcggagccgggggcttgaccacactttccagttacaacgagctggat
aacaacattttcagacaagcttatttatttgacttgcccattattgaaacgttgagcttg
tttgttctgcttgccaactttgttttcggctgtttgatgctgcaaaatgggaaggctcat
gacgcaatgcatggttcagcatcaactaatgcaacaacttccttccggcaacactttcca
aatgctattgttgttggatacttttgtaattacgcttggcaacatatttacaagcttgct
ttccggctttgttgtgttcagcatattaggctttatggccgacaatcggtcgagtctgtt
gcaacagccggtcctggtctgctgtttgtcacttatccatacgcgctgactcatctaccg
ttgtcgcccgtttggtcagctttgttttttttcaccgtaattttgatgggaattgattca
cagattgtgctcgtcgaggtggtaattaccgcgttcaaggatcaatatccgaaacttcga
gaaccgaaaattcgtgtctgcgcagttgcttgcacttgcgccatttcttatctcatcggg
ttgttgatgtgcacaggaggtggtgcgtatattttgaacttgctcgacacgtttgcaggc
ggctggccgctccttctgcagtgtcttttggaagtcataattgtgctaccgactggatgt
cgttttgattgtttttctgaactgacgcgcagttctcatgacgggatatgtcaccaaatg
gtcgaagcactggtttcattgttctgcttgtaa
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