Trichinella spiralis: Tsp_06102
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Entry
Tsp_06102 CDS
T01609
Name
(RefSeq) RNA-binding protein 39
KO
K13091
RNA-binding protein 23/39
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_06102
Spliceosome [BR:
tsp03041
]
Common components
Common spliceosomal components
General mRNP proteins
Tsp_06102
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RBD_DEAH11
TFIIA
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
10911415
NCBI-ProteinID:
XP_003380392
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MADDADVEAMLEETFAPIEDKVSYPRMLLRCERVPFMKSTEDWHSNYERCVQVLLRWQLR
RCQSMQFGKPIPPLSKCKPEEAKANKNKENGDLSEKKSRRSHRSGSREKKKKKKKSKSRS
RSKNRSSRRDRSRSKHRRSRSRERRTRHRSRERRDHRYPSSRGAWRSPPYRRSRSPPPYT
RGGKPGEGLSSGKKLPGPERRDVMPFTPRYSPPRNYVDSELSPEERDARTVFCMQLARSI
RPRDLEEFFSEVAKVRDVRIITDSKTRRSKGIAYVEFWDLDSVPLALSLHGKRLLGAPIV
VQPTQSEKNRMASAMLATAFTQNRGPMKLYVGSLHFNITEEMLRGIFEPFGKIESIQLLK
DPETSRSRGYGFITFYNSEDAKRAMEQLNGFELAGRPMKVGHVTEHQNTLFQPSLDSDEL
DRSGIDLGTTGRLQLMAKLAEGTGMELPQVAKQMLNAQPQQHQHTLPPAMQVQQQQQQQQ
QQHEQQQQLASQQLIATQCFVLSNMFNPMAESDPDWDREIRDDVIDECNKHQGVVHIFVD
KASGDGNVYVKCPTVAAAVAAVNSLHGRYFAGKCVVSRCLLQLCMMLQCYNGKLRSNGEL
SPTVPRCNQRGGIVATIVYGKMKKHNWTQIVVKVIFCTLCTVADCCTLCKNKCFLLLVDA
EVVRPALLPNCEAFETIRLN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacgcggatgttgaagcaatgcttgaagaaacatttgcacctatagaagac
aaggtatcgtaccctcggatgttgttgcgatgtgaacgggtaccgtttatgaagagtact
gaagattggcacagcaactacgagcggtgtgtgcaagtgcttttgcgttggcagctgcga
cgctgtcagagcatgcaatttggaaagccaataccgccactgagcaaatgtaaaccggaa
gaagcgaaagcgaataaaaataaagaaaatggtgatttgagtgaaaaaaaatcacgtcga
tcgcatcgaagtggcagtcgagaaaagaaaaaaaaaaagaagaaatccaaaagtcgaagt
cgttcgaaaaatcgatcgtcacgtcgggatcgcagtcgttccaaacatcggcgcagtcgg
tccagagaacgccggaccaggcatcgttccagggaacgacgagaccatcgttatccatct
tctcgaggggcgtggcggtcgccaccgtaccgccgttcccgcagtccacctccgtacact
cgaggcggcaagcctggcgagggtctgagcagtgggaaaaaattgcccggtccagaacga
cgggatgtcatgccgtttacaccacgctacagtccaccgagaaattatgtcgattcggag
ctttctccagaagagcgagatgctcgtacagttttttgcatgcaactggctcgcagtata
aggcctcgtgatttggaagaatttttctcagaagtggccaaggtacgagatgtgcgtatt
attacggacagcaaaacgcgtcgttcaaaaggcattgcttatgttgaattttgggatctg
gactctgtaccgttggctttatcattgcacggtaaacgtctgcttggagcgccgattgtt
gttcaaccaactcaatctgaaaagaatagaatggcttcggccatgttggcgacggcattt
actcaaaatcgtggtccgatgaaattgtacgtcggctctttgcatttcaacattaccgaa
gaaatgttacgaggaatattcgagccatttggcaaaatagaaagcattcaacttttaaaa
gatccagaaacaagccgttcgaggggttatggcttcattacgttttacaattctgaagat
gctaaacgagcgatggaacagttgaatggatttgaattggctggtcgcccgatgaaagtt
ggtcacgttactgaacatcagaatactttgttccagccgtcgcttgattcggacgagttg
gatcgttcaggcattgatcttggaactaccggtcgattgcaactgatggccaagttagct
gaaggaactggaatggaattacctcaggttgcgaagcagatgttgaatgcacagccacaa
caacatcagcatactttaccaccggcaatgcaagtgcaacaacaacaacaacagcaacaa
cagcaacatgagcaacagcagcagctcgcatctcaacagttgattgcaacgcagtgtttt
gtgttgtcgaatatgttcaatccgatggctgaatcggatccagattgggatcgggaaatt
cgtgacgatgtgattgacgaatgtaataagcaccagggtgtggtgcacattttcgttgac
aaagcatcaggcgatggaaatgtctacgtcaaatgcccgactgttgcggctgctgttgcg
gccgtgaacagtttgcatggtcgttattttgccggtaaatgcgttgtttcgcgttgtttg
cttcaattatgcatgatgttgcaatgttataacggcaaactacgttccaacggcgagtta
tcaccaactgttcccagatgcaatcagcgcggtggaattgttgcgaccatcgtatacgga
aaaatgaaaaagcacaactggacacagattgtagtgaaggtcattttctgtacattgtgt
actgttgctgattgttgtacattatgcaaaaataaatgctttttgctacttgttgatgca
gaagtagtccgtccggctttgcttccaaactgtgaagcatttgaaacgatccgtttaaat
tga
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