Trichinella spiralis: Tsp_06110
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Entry
Tsp_06110 CDS
T01609
Name
(RefSeq) RNA polymerase Rpb1, domain 5 superfamily
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
10911510
NCBI-ProteinID:
XP_003380406
LinkDB
All DBs
Position
Unknown
AA seq
1728 aa
AA seq
DB search
MFIMVQQFYGDTMLSQKLKCQADCNTLNSAGFDILTPEEVLEISVKEITVPNAFDALYHP
IAGGLCDPAFGPVDYMEYCATCSFTGAQCPGHYGHIRLPLPMFNPLLFDITYQLIRGTCF
VCHRLFVADNEVALKIFFAQMEALDEGNLALASEIADISTECVSDSPNLQNLNNSENSVK
KNMLKERLEELKKNRKTNSKGNLEITKNVSQVRRELISEFCTNFLYRRIKQCPSCTSQVT
GIRNIGKRAVILTLPSKKGILKNKSNDSLKNNNKYAHRNQRYVSAAEYADGFIPTDLLFL
THLLVMPPKFRPIVELAGRKCDNPISQIYRNIIEDCLSIKRFMQKATADKWQTEGGESGD
AVQDSEEQIQTLCLTMQSHVNELYDNSETSRIASGLTVQLNAKGLRQVLEKKEGLFRKHM
MGKRVNFAARSVIAPDPYMSVDGVGIPEVFAKRLSFPEAVFSANATAMSEAVLHGPDVHP
GANFIIDERGMKIYLNAGKEIERSGMAKRLLQTSQRFGIAYPKKVCRHLKENDFVLLNRQ
PTLHKPSIMAHKVKVLKNQRTLRLNYATCKTYNADFDGDEMNAHFPQNEIARAECSEIAD
VARQFLVPKDGKPIAGLIQDHVVSGFMLTMRDKFLTKEDFNYLLLSAFPSVEHPWRQVPP
TIFKPVRRWTGKQVVTTILLNVIPSHLPPINLVTKAKTSIKNWTVPGKRNPIFELSESNV
VICSGELLCGVLDKAQMGASPYGLVHCIFELYGPAVAAKLLSCFSRLFTTYLQMRGFTLG
VEDIMLTRKADSKRRKLLSTVDCCGSEAVREALALDVGIEDDEVKLILEKMHFKNEKESL
LRVEQCFRQATDKFNDQANKVCFPNGLLKAFPDNGLSLMIETGAKGTSVSKEYISSYNTM
RVNFFQMSCMLGQVDLEGQRVKVGMSGRTLPCFQRYDTKPRAGGFVSQRFLSGVRPQEFF
FHCLAGREGLIDTAVKTSRSGYLQRCIIKHMEGIVANYDLTVRDADGSIIQFYYGEDGFD
VTKSQFYDDTHLAFLHANIDVLEQTSGDLPNFENEDNLIAAKRFSKIKRWKEKYGKCPEV
ESMHKSQLALLPNVDEDSSTVDKEQLVAAWFEYPVEERRRWLRQSVKWRPDPVMSTLRPT
TCIGALSDKFLEQLDNFIQQRQARVDESVHKFEKLMKLRGMRSLVEPGETVGLLAAQSIG
EPSTQMTLNTFHFAGCGEMNVTLGIPRLREILISGSATISTPTSRVQFRHGVSRELAEDV
QRRMNRIVLNQVLEFANQMEFVTTDGYCSYCCTLRTGWYSRLLIDANFFHRAKYREYEIT
LKLSKRRKRPYSVRHLDSRTVMAKIEQGFFRSLCFSLKKMFDSGNKFREVEMFHIENENE
INENEDGLTFAGGNDQDSSEEEDDNDVDAVEAQQRQRHKDDNEYLGEDEEAIELNMFTSG
ENCLFDSTGNEGESVVQQNSSSEEIRPGKDDDDDEHLPLDQYRVKMVVEQDSLITDYRYD
SKRNHWCKATVKVCSMYDDGCCCIFFLHSLGAIQVWSDRHASVRDIKRCMLTEQNGELFL
ITEGINLKVLDDEVFIGFFKPVLCLLNDRTYLMWIVSIVTTYTPWLACMALRRRLNRLSE
SETKNVFASYGIEVDHRHLSLLSDYMTHTGKYYSFSRNYMNSSTSPFQKMSFETTVNYMK
EALTRRTLDTMQTPSANLVVGRLPRFGTGFFDVLAPLPNRNVEAEVEQ
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atgtttataatggtacaacagttttatggtgacacaatgttaagtcagaaattgaagtgt
caagctgactgcaatacactaaattccgccggatttgacattttaacacccgaagaagtg
cttgaaattagcgtgaaagaaatcactgtaccaaatgcattcgatgcattgtatcatccg
attgctggtggattatgcgatcctgcatttgggcctgttgattatatggaatattgtgca
acatgctcgtttactggtgcacaatgtcctggtcattatggtcatataaggcttcctttg
ccaatgttcaacccgttattatttgacataacatatcagcttattcggggaacatgtttt
gtttgtcatcgtttgtttgtggctgataatgaagttgcgctaaagattttttttgctcaa
atggaagctcttgatgaaggcaatttggcgctcgcttcagaaattgccgacatcagtaca
gaatgcgtttctgacagtccaaatttgcaaaatttgaacaattctgaaaattcagtgaaa
aaaaatatgctgaaagagcgattggaagaattgaagaagaatcgtaaaacaaattcaaag
ggaaatttggaaattactaaaaatgtatcgcaagttcgtcgagaattgatatccgaattc
tgcacgaattttctttatcgtcgaataaaacaatgtccatcttgtacatcccaagtgact
ggtatacgtaatattggcaaacgggctgtaattttaactttgccttctaaaaaaggaata
ttgaaaaacaaaagtaacgattcattgaagaacaataataaatatgcgcatagaaatcag
cgttacgtatcggcggctgaatacgcggatggatttataccaactgatcttctgtttctc
acacatttgttagttatgcctccaaaatttcgaccgattgttgaattggctggtcgtaaa
tgtgacaatccaatatcacagatttatcgaaatataattgaagattgcctatcaatcaag
cgttttatgcagaaagctactgctgacaaatggcaaactgaaggcggtgaatctggtgat
gctgtacaagacagcgaagagcagattcaaacactctgcttgaccatgcagagtcatgtg
aatgaattgtatgacaacagtgaaacaagccgaatagcgtctggcttgacagtgcagctt
aatgccaaaggattgcgtcaagtgttggagaagaaagaaggcctcttcaggaagcatatg
atgggtaagcgggtaaattttgccgctcgttctgtaattgcaccggatccttacatgagc
gtcgatggcgttggtattccggaagtttttgcgaaaaggctctcttttcctgaagctgta
ttttccgccaatgcaactgccatgtctgaagcagttttacacggtcctgatgtgcacccg
ggggcgaattttatcatagatgaacgtggaatgaagatttatttgaatgctggaaaagaa
atcgaaagatctggaatggcgaagcgactgttgcagactagccaacgttttggcattgct
tatcctaaaaaggtgtgtcgtcatttaaaagaaaatgatttcgttcttctcaatcgacaa
ccaactttgcacaagcccagcataatggcgcacaaagtgaaggtattgaagaaccaacga
actctgcggttgaattatgctacctgtaaaacgtacaatgcagattttgacggcgatgag
atgaatgcccactttcctcaaaacgaaattgctcgtgctgaatgctcagaaattgctgac
gtggctagacagtttttggttccaaaggatggcaagccaattgctggcctcattcaggat
catgttgtatccggctttatgttgacgatgagggataaatttctaactaaggaagatttt
aattacttgctgttgagcgcatttccatcggttgaacatccctggcgtcaagtacctcca
actattttcaaacccgttcggcgatggactgggaagcaggtagttacaactattttgctg
aacgttattccatctcatttacctccgattaatttggttactaaagccaagacatcaata
aagaattggacagttcctggtaaacggaatccaatttttgaattaagcgaaagcaatgtt
gtaatctgctctggtgaattgctttgcggtgtgttggataaagcgcaaatgggcgcctct
ccctacggtctggtgcactgtatttttgagctttatggaccggcggtagcggcaaagttg
ttgtcttgcttttccagactgttcaccacatatttgcagatgaggggcttcacattgggt
gtagaagatattatgctgaccagaaaagcagactcaaagcgaagaaaacttttgtcaacg
gttgattgttgtggctcagaggcagtgcgagaggctttggcattggatgttggaattgaa
gacgatgaagtgaaactaattttggaaaagatgcatttcaaaaatgaaaaagaatccctc
ttgcgggtagagcagtgttttcgacaagctactgacaaattcaacgaccaggcgaacaaa
gtctgctttccaaatggactgttgaaagcatttcctgacaatggtttatctttaatgatc
gaaactggcgctaaaggaacatccgtaagcaaagaatatatttcttcctacaatacaatg
cgtgtgaattttttccaaatgtcttgcatgttgggtcaggtggatttggaaggccagcgt
gtgaaagtgggaatgtctggccgcacacttccgtgcttccaacgctacgacacgaaacca
cgtgccggcggctttgttagccaacgttttctgtccggtgttagaccgcaagaatttttc
tttcattgcctagccggtcgagagggtttgattgatacagcggttaaaactagtcgaagc
ggttacttgcagcgttgtattattaaacatatggaaggaatcgttgccaattacgatttg
acagttcgcgatgcagacggctctattattcaattttattacggtgaggatggttttgac
gtgacgaaatcgcaattttacgacgacactcatttggcttttctgcatgctaacattgac
gttctcgaacagactagcggagatttgccaaactttgaaaatgaggataatttaattgcg
gccaaacgattttcaaagatcaagcgatggaaagaaaaatatggaaaatgtccagaagtt
gaatcgatgcataaatcccagttggcattgctgcccaatgtggacgaggacagttcgacc
gtcgacaaagagcagctggtcgcggcttggtttgaatatccagtggaagaacgtcgtcgg
tggctgagacagagtgtaaaatggcgcccggatccagtaatgtcaacgctgagaccgacg
acatgcatcggtgctctttcggataaattcttggaacagttggacaattttattcaacaa
aggcaggcaagagttgacgaatcggtgcacaagtttgaaaagctgatgaaattgcgcggc
atgcgttcgttggtagagccgggcgagactgtcggcttgttggccgcacaaagtattgga
gagccttccactcagatgacgttgaatacgtttcactttgccggatgtggcgagatgaac
gtcacccttggcattccgaggctgcgtgaaattctgatcagcggctcggccaccatatcc
acgcccacatctcgagttcagtttcgacacggtgtcagtcgtgagttggctgaagacgtg
cagaggcgaatgaatcgtattgtattgaatcaggttctcgaatttgcgaatcaaatggaa
tttgtaactactgatgggtactgttcctactgttgcacattgcgtactggttggtattcg
agattattgatagatgcaaacttttttcacagggcaaagtatcgcgaatatgaaattacg
ttgaaactttcgaaacgacgcaagcggccatattcagttcgtcacttggactctcgtacg
gtaatggctaaaattgagcaaggcttttttcgaagtctttgtttctcgcttaagaaaatg
tttgattcaggcaacaaattcagggaagtggaaatgtttcatattgaaaatgaaaatgaa
atcaatgaaaatgaagatgggttgacatttgccggtggaaatgaccaagacagttcagaa
gaggaggatgataatgacgtggatgctgtcgaagctcaacagcgacaacggcacaaagat
gacaacgagtatctaggcgaagatgaagaagcgattgaattgaatatgttcaccagtgga
gagaattgtttgttcgattcgactggcaatgaaggggaatcagttgtacagcagaacagt
agcagtgaagaaatacggccaggaaaagacgacgatgatgatgaacacttgccattggat
cagtaccgagtcaagatggtagttgaacaagattccttgattactgattacagatacgac
tccaaacgaaaccactggtgtaaagcgacagtgaaggtttgcagtatgtacgatgatggt
tgttgctgtattttttttttgcattcattaggtgccattcaagtatggagcgatcgacat
gcgtctgttcgggatattaaacgctgcatgttgaccgagcagaatggagaattgttttta
attactgaaggcattaatctcaaagtattggatgatgaagttttcatcggattttttaag
ccagtgttgtgtttactgaacgaccggacatatttaatgtggatcgtatctattgtaaca
acatacacaccatggctagcatgtatggcattgaggcggcggctcaatcgattatcagag
tccgagactaaaaacgttttcgcaagttatggtattgaagttgaccacaggcatttatct
ctgttgtccgattatatgacacacaccgggaaatattattcgtttagccgaaattatatg
aactcgtccacatccccatttcagaagatgtcattcgaaactactgtcaattacatgaaa
gaagcactgacgaggcgtacgttggacacgatgcaaacgccgtcggcaaatttggttgtt
ggtcgattgcctcgatttggaactggcttttttgacgtattggctcctttgccgaacaga
aatgtggaagctgaagtagagcagtaa
DBGET
integrated database retrieval system
