Trichinella spiralis: Tsp_06143
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Entry
Tsp_06143 CDS
T01609
Name
(RefSeq) transcription factor SOX-3
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsp03000
]
Tsp_06143
Transcription factors [BR:
tsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
Tsp_06143
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
10911545
NCBI-ProteinID:
XP_003380441
LinkDB
All DBs
Position
Unknown
AA seq
385 aa
AA seq
DB search
MDASSEQQLKAAAMAASLQLPLGGQSGQDLMSFGGMTVNGGSPYPSPGGGHHLGPSMSHL
SYGHLPQQQSTSPPTIGMIHNQSSGSGSSGGGSGSSNKKDDRVKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGLEWKNLSESEKRPFIDEAKRLRADHMKLHPDYKYRPRRKQKT
LMKKDKFMGPTGLLGAAGLDPMKPAGHQQAVYQMTGYPMMSSSPPNGAYQIAAANFGTTT
DPYHQQQVAAAYARYDPMTMAAMQHMQGMQSGPAPVPTSAYLNGSMAYHHSAPSGGGGYP
GLSCSNPNTMAGSPYGAGSGTGQLVKSESISPPPPPSSAQMGGARRNDISDFINVYLQPT
SADQQKLQYMSNMNAAMSSVPLNHL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggacgccagcagtgagcagcagctgaaagcggctgcaatggcagcaagcttacagcta
ccacttggtggccagtctggccaagatctgatgtcatttggcggcatgacagttaatggt
ggatcaccgtatccgtcaccaggtggtggccatcatcttggacccagtatgtcacacctt
tcttatggtcatcttccacagcagcaatcgaccagtccaccaacaattggtatgatccac
aatcagagcagtggaagtggttcgagtggaggtggctctggttcttctaataaaaaggat
gaccgtgtcaaacggcccatgaatgcatttatggtttggtctcgagggcagcgacgcaaa
atggcccaagaaaatccaaaaatgcacaattctgaaattagcaaaagacttgggttggaa
tggaaaaatttatctgaaagtgaaaaacggccgttcattgacgaagcgaagcggctgcga
gctgatcatatgaagttgcatccagattacaaatatcggcccagacgaaagcagaagacg
ttgatgaaaaaggataaattcatgggcccaacgggattgctgggtgcagccggtctggat
ccgatgaaaccggctggtcatcaacaggcagtttatcaaatgaccggctacccgatgatg
agctccagtccaccaaacggagcgtaccaaattgccgctgcgaatttcggaaccacaact
gatccatatcaccagcagcaagtggctgccgcctatgctcgctatgatccaatgacaatg
gcagcgatgcagcacatgcaaggtatgcaaagcggcccggcgccggttcccacgtctgcc
tatttgaacggctccatggcatatcatcattcagctcctagtggtggtggaggatatcct
ggtttgtcatgttctaatccaaatacgatggctggtagtccatatggggctggatctggt
acaggccagttggtcaaatcagaaagtattagcccaccacccccgccgtcgtctgcgcaa
atgggtggagcgaggcgcaacgacatatctgattttatcaacgtttacctacagccgaca
tctgcggatcagcaaaagctgcagtatatgtcaaacatgaatgccgcgatgagctcggtg
ccgctcaaccatctttaa
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integrated database retrieval system
