Trichinella spiralis: Tsp_06192
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Entry
Tsp_06192 CDS
T01609
Name
(RefSeq) putative RNase3 domain protein
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Tsp_06192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_06192
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_06192
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_06192
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Tsp_06192
Messenger RNA biogenesis [BR:
tsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tsp_06192
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
90S particles
RNase
Tsp_06192
Prokaryotic type
rRNA processing factors
Tsp_06192
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Tsp_06192
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DLIC
Ribonuclease_3
Ribonucleas_3_3
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
10911572
NCBI-ProteinID:
XP_003380468
LinkDB
All DBs
Position
Unknown
AA seq
1460 aa
AA seq
DB search
MKSTRCVREELSVPQSKESDSMDQNPSSSFEEPLLVGLNDFIDQDFDIDDEEQEEEEVTI
FSQSSPRLTVSCVSAHDYYKTIACGQSDVKVATQKLTALHCEFDQHVVQLFRSAKQTWQK
DENDGASQSPVKLQCSAESDEQDEENACEGGKQPNGNLNGDSHNNYDVNDNGRFKDALKE
LERKRRHPARLHPDIWYNDAGQLNDGPSCRCCWRARQKGISHGRYPGEARVEPCDPLSNN
ANRLHYYRVVIKPQANLFQKFSITEIEYKDKVYSFDGFGILSHELIDRNMPLCRLNRWNI
DYEVSLVEEVVPDFFSVRDLDLFWEYVFVELLELYDVKLFAANVEDGCPIFHIYPRFVCK
RKEKTGCTQQMLPMSVVLEHLLQNCRLIFDQPAERGDFNDRVNKHLDKFSEKLKGQVVAN
PWKRPVALRLDQLDRMQKAPDGYSVIVHFGRHPTVTTYAGTPEYQRAWKRFAKFRRVVML
QSYPRTEDRAKLAKMEAHLTELKAKNSVKRDLIMEVSCQGFMQTGIWSDVVQHCLILLVL
LNHIRFHRCLRVFQQRIDYSFRKPSLLELAFTHPSYRADSGTNADHVRNVLNNCGLRQLE
FGSKRTNPWNSRKRGVSCLVNVMSRMGEKKSRASSTVNNERLEYLGDAVIEFLTTIHLFY
IFPDLEEGALAPYRTLMVQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEA
ILGAVYLDGGVHVADRVFGRFLFPPDWNQALHWVWFHPPRHPLQQEYPDGDRHLIHQCPT
LQKLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLY
KHFPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLV
EAFLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQCCLALRNPSGAQST
VKEEIWSKILCETQSRSKCALPTASVIVLGDSDSGKTSMVARLQGVEEPKKGAGFEYHYL
EINPDYKVGSYAYQLSSSLPDISAGDVPRLGVWVLDGDPLYAPLLRFALPAENLKHSVAL
ICCSMAEPWNIGQSLQRWTDVLEKHLNQSGLYSTHVLSECRERQVRFWQEYVEPLDSSSH
SELGQKVPSMEPDQILLPLGQSTLTRNLGLPLIVVVTKCDLLSSYEKQFDLKDEDCDLIQ
KQIRQFCLKHGAALVYTNVKEGRNCDLLYKYILHRVFGFPFTQPACVIDKEAMFIPAGWD
NEKKISIIEDGLPEGAEEAFLNRFSDQLVNPLNNSFNDNNITAARLQTLLNTTLPNTQSP
GQHRPDGSSPMPMSITSPRHSSDKSRPSPIGGQSSNGLFSSASVSAGGSATSAQSKKADS
IGKIAMQTVSGTGTGAGAAGSVGGGPVGPSSEGALAQFFNNLLVKRPASASTAAGSAKLT
SESSVRERTFDDSESETQTE
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgactagatgtgttcgggaagaattgagtgtgcctcaatctaaagaaagcgat
tcgatggatcagaatccatctagcagttttgaagagccgttgctagtcggtttgaacgat
ttcattgaccaagattttgacattgacgatgaagaacaagaagaggaggaggtgacgatt
ttttctcagtcatctcctcgtttgacggtcagttgcgtatctgcgcatgactattacaaa
accattgcctgtggacaatcggatgtgaaagttgcgacgcagaagttgactgctttacac
tgcgagttcgaccagcatgtagtgcagttatttcgctctgcgaaacagacatggcaaaag
gacgaaaatgatggtgcttcgcagagtcccgtgaaattgcagtgctcggctgagtcggat
gaacaggatgaagagaatgcttgcgaaggtgggaaacaaccaaatggaaatttaaacggc
gacagccacaacaactacgacgtgaatgacaatggtcgcttcaaggatgcgctgaaagag
ttggaacggaaacgcagacatccggctcgtctacatcctgacatatggtacaacgatgca
ggtcagctgaacgacggaccgagttgtcgttgctgctggagggctagacagaagggtatc
agtcatggaagatatcctggcgaagctagagtggaaccgtgcgatccgttgtcgaacaat
gctaaccgcttgcattattacagagttgttatcaaaccgcaggcgaatctttttcaaaaa
ttttccataaccgaaattgaatacaaagataaagtatactcgttcgacggttttggcata
ctttcccacgaactgattgaccgcaacatgccgttgtgtcgcttgaatcggtggaacatt
gattacgaagtgtcgctggtggaagaggtggtgccagattttttttccgttcgtgatttg
gatttattttgggaatatgtgtttgtcgaattgctcgaattgtacgacgtgaagttgttt
gctgccaatgtggaagacggctgcccaatatttcacatttatccgagattcgtatgcaag
cggaaagagaagactggatgcacgcagcagatgttgccgatgtcggttgttttggagcat
ttgttgcagaattgtaggttgattttcgaccaacctgctgagcggggtgatttcaacgac
cgggtcaacaagcatttggacaagttcagcgaaaagttgaaaggtcaagtggtggcaaat
ccgtggaaacgtcccgtggcgcttcggctcgatcagctcgaccgaatgcagaaagcgccc
gacggatattcggtaattgtacactttggccgtcacccgacggtcactacctatgccggc
acgcccgaataccagcgtgcttggaagcggtttgccaaatttcgacgggtagtgatgctt
cagtcgtatccgaggaccgaagaccgggccaagttggccaaaatggaagctcacttgacc
gaactgaaggcgaaaaacagcgtcaagcgtgacctgatcatggaagtctcttgtcagggt
ttcatgcagaccggtatttggtcggacgtggtgcagcattgtctgattttgttggtattg
ctcaaccatatccgctttcatcgttgcctgcgcgttttccaacaacgcatcgactattcg
ttccgtaagcccagcctgctcgaattggcgttcacgcatccttcttaccgggccgacagc
ggcactaatgccgatcacgtgcgcaacgtgctcaacaactgtggtctgaggcagctggag
ttcggctccaagcgcaccaacccgtggaacagccggaagcgtggtgtcagttgtctagtg
aacgtgatgtccaggatgggcgagaagaagagtcgtgcttcgagcacggtgaacaacgag
cgtctggaatatctgggcgacgcggtgattgaatttttgaccaccattcatctgttttac
atttttcccgatttggaagaaggtgctttggccccgtaccgaacgttgatggttcagaat
agtcatttgtcgaagttggcggcgaagatgggcttggacgaattcatgctgttcgcccac
ggtccggatttgtgcttcgaagaggacatgcgccacgcgatggcgaacgctttcgaagcg
atcctgggtgcggtctatttggacggtggcgtccacgtcgcggaccgtgttttcggacga
tttctatttccgcccgattggaaccaagcgttgcattgggtttggttccaccccccgcgc
catccgttgcaacaagaatatccggacggtgatcgtcacttgatccaccagtgtccgacg
ttgcagaagctgactgaattcgaacaacgcatcggcgtgcgattcaaccacatccgtctt
ttggccagggccttcacgcgcaagtgtgtcggttacaattttctcactttgggtcacaac
cagcggttggaatttttgggcgattcggttcttcagctggtcaccacggaatatttgtac
aagcactttcccgaccaccaagagggacatttgtcgctgttgcgaagctcgttggtcaac
aaccgtacccaggcggtgatttgtgacgatttggaaattccgaattttattttgcaaccg
ccggcatttttgcgcaacgaacctcaagaattgcgcatgaaggacaaggcggatttggtc
gaagcgtttttgggcgctttgttcgtcgatcacagtttggattactgtgcggcgttcgtg
cgtcactgctttctgccacgccttaagcagttcatagaagagcagcgttggtgcgatccg
aaatcccaactgcagcagtgttgtctggcgttgcgcaatccgtccggcgcgcagtcaacg
gtgaaagaagaaatatggagcaagatactttgtgagacgcagtcgaggtccaagtgtgcg
ttgccaacagcgtcggtgattgtgttgggtgacagcgattcgggaaagacgtcgatggta
gccagacttcagggtgtggaagagccgaaaaagggagctggattcgaatatcactatttg
gaaatcaacccggactacaaggtcggctcgtacgcttaccagttgagcagcagtttgccg
gatattagtgccggcgatgttccacgtttgggcgtatgggttctggacggggatcctctg
tacgcgccgttgcttcggttcgctttgccggcggaaaatttgaaacacagcgtcgcgttg
atttgctgctcaatggccgagccgtggaatattgggcagtcgttgcagcgctggaccgac
gtgctggaaaagcatctgaaccagtccggcttgtacagtacgcacgtgttgtcggaatgt
cgcgaaaggcaggttcgattttggcaagaatacgttgaaccgttggacagcagctcgcac
agtgaacttgggcaaaaggtgcccagcatggagccggaccagattttgttgccgctcggc
cagtcgacgttgaccagaaatttgggcttgccgttgattgttgttgtgaccaagtgcgat
ttgttgtcatcgtacgagaagcagtttgatttgaaagacgaagattgcgatttgatccag
aaacaaattcgacaattttgcttgaaacacggcgccgcacttgtttacaccaatgtcaaa
gagggtcgcaattgtgatctcttgtacaagtatattttgcatcgtgtttttggttttccg
ttcactcaaccggcatgcgtaattgacaaagaggcgatgttcattccggccggatgggat
aatgaaaagaaaataagcatcatcgaagacggtttacccgagggggcagaggaggctttt
ctgaatcgtttcagcgatcagcttgtgaatccattgaacaacagcttcaacgacaacaac
atcactgctgcacgtttgcaaacgttgctgaacacaactttgccgaacacccagtcgcct
ggtcagcatcgtccagacggcagctcaccgatgccgatgagtatcacttcaccacgtcac
tcgtcggacaaaagtcgaccgtcgcccattggtggtcagtcgtcgaacggtctgttttcg
tccgcatccgtttctgccggcggttccgcaacatccgcgcagtcgaagaaagcagacagc
atcggcaaaatagcaatgcaaactgtcagcggtaccggaaccggcgccggtgccgccggt
tcggtgggcggtggtccggtgggaccgagctccgaaggagctttggcgcagtttttcaac
aatcttttagtgaaacgtccagcgtcggcgtcgactgccgccggttctgcaaaactcact
tctgaatcttctgtccgtgaacgaacttttgacgattctgaatccgaaactcaaacagag
taa
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