Trichinella spiralis: Tsp_06220
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Entry
Tsp_06220 CDS
T01609
Name
(RefSeq) putative RNA recognition motif protein
KO
K14573
nucleolar protein 4
Organism
tsp
Trichinella spiralis
Pathway
tsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Tsp_06220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_06220
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
Tsp_06220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_Rrp7
RRM_3
Motif
Other DBs
NCBI-GeneID:
10908291
NCBI-ProteinID:
XP_003378292
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MKRWRLILRNLSFKATADAIREVFAPYDGHCAGFGFVQFKTFPAAVQALRELNATSLLNR
IMAIDWALPKDQYLNLLIKEKQEAENMTMEEMVLRKLESKNEFTQASTSKIKVKNENEVI
QENDVDEEDQLQEETEIMEEGESSEKISAEDNLQKSKEQKRDPGIEEGRTLFVRHLPFDV
TNDTLKEYFSRFGPLKYALVCRYSGTDHSKGTGFIQFLTKEAAQKCLEAANNASESERLC
IGNSSLSVCLAVSRSELERLNSEKCISKKQPKDNRNLKLLEYCEVKDNCGMSAKDAEKRK
KIKASNEQKLKNLNIFLSHTRLCVHNLPLKLSDKDLKKLCYEAVSDRKSKIIECRIMRDL
NRINSSGIAHSLGYAFVQFTEHEHALKCLKALNNNPKVFTNEKRPIVEFSLENKAVVNLK
NQRRVHAKMKQMAVSAGVSEMNPNEVPVGEKTEHKKLSKKERRRKRRYFARKMLFEMQHE
KQRGSKNSSCTEVFTLLFMSCVK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggtggaggctaatacttcgaaatctatccttcaaggcaaccgcggatgccatt
agagaagtatttgcaccatatgatggtcattgtgctggctttggatttgtacagtttaaa
acatttccggctgctgttcaggcactgagagaattaaatgcaacatcacttttaaatcgc
attatggctattgactgggctttacctaaagatcaatatttaaaccttctcatcaaagag
aagcaagaagctgaaaacatgacaatggaagagatggtattgaggaaactagaatctaaa
aatgagttcactcaagcaagtacaagcaaaatcaaagtgaagaatgaaaacgaggtaatc
caagaaaacgatgtggacgaagaagatcagcttcaggaagaaactgagattatggaagaa
ggcgaatcttctgagaagatatcagctgaagataatcttcaaaaatccaaagaacagaaa
cgggatccaggaattgaagaaggacggactttatttgtgcgacatttgccgtttgatgtt
acaaatgacaccttgaaggaatatttttcacggttcgggcctctcaaatatgctttggtt
tgtcgatattccggaacagatcattcgaaaggtacgggttttattcagtttttaactaaa
gaagcggcccaaaaatgcctggaagccgcaaataatgcatcagaaagcgaaagactttgc
attggcaacagcagtttatcagtgtgtttagccgtttcgcgttccgaactggaacggcta
aattctgagaaatgcatttcaaaaaagcagccaaaagacaatcgaaacttaaaattgctc
gaatattgtgaagtgaaagacaactgcggcatgtcggcaaaagatgctgaaaagagaaaa
aagatcaaagcttcaaatgagcagaaattgaaaaatttaaatatttttttgtcgcataca
cgtctttgcgtgcacaatttacctttaaaattatctgacaaagatttgaaaaaactatgc
tatgaagctgtcagtgatcgaaagtcaaaaattattgaatgtcgcatcatgagagattta
aatcgaataaatagcagtggaattgctcattctttaggttacgcttttgtacagtttact
gagcatgagcatgcattaaaatgtttaaaagctctgaacaataatccgaaagttttcaca
aatgaaaagagaccaattgttgaattttcgttggaaaataaagcagtagtgaatttgaaa
aatcagcgcagggttcatgccaagatgaaacaaatggcagtttcagctggagtttcagaa
atgaatccaaatgaagtacctgtaggggagaagacagaacataagaaactttcgaaaaaa
gaaagaagacgaaaacgtcgatattttgctagaaagatgctatttgaaatgcaacatgaa
aagcagcgcggatctaaaaattcttcttgcactgaggtattcacgcttctgtttatgtct
tgcgttaagtaa
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