KEGG   Trichinella spiralis: Tsp_06227
Entry
Tsp_06227         CDS       T01609                                 
Name
(RefSeq) chromatin regulator subfamily B member 1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tsp  Trichinella spiralis
Pathway
tsp03082  ATP-dependent chromatin remodeling
tsp03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Tsp_06227
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Tsp_06227
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tsp01009]
    Tsp_06227
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_06227
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_06227
Protein phosphatases and associated proteins [BR:tsp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     Tsp_06227
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     Tsp_06227
    SWI/SNF complex
     Tsp_06227
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    Tsp_06227
   PBAF complex
    Tsp_06227
   SWI/SNF complex
    Tsp_06227
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 10908284
NCBI-ProteinID: XP_003378285
LinkDB
Position
Unknown
AA seq 193 aa
MKRAMWLGQFASGSHHLDAVPCSTPVAHCRIGHRNHDDTKVDLIELNANQPEVLVPIRLD
MELDGFKLRDSFTWNKNESVITPEMFAEILCDDLELPPASFIPAIAQSIRQQLDAFCADN
LLSDEPDQRLNVHVGNLSLVDQVEWDMSDPNNCPESFAIQFCSELGLGGEFVPIIAYSIR
GQLAWHQRTYAFR
NT seq 582 nt   +upstreamnt  +downstreamnt
atgaagcgagcaatgtggttgggacagtttgcaagcggatcgcatcatctagatgctgta
ccttgttcaacgcctgttgctcattgtcgaataggtcatcgaaatcacgatgatacaaaa
gtggatctaattgaactgaatgcaaatcaacctgaagtgcttgttccaattcgcctcgat
atggaattggatggtttcaaactcagagattcatttacgtggaataaaaatgaatctgtg
ataacacctgagatgttcgcagaaattctttgtgatgatctcgaattgccaccagctagc
ttcataccagctatcgcacaaagcatacgacaacagttggatgctttttgcgcagataat
ctactttccgatgaacccgatcaaaggttgaatgttcacgtaggaaacttgtctctggtt
gatcaagtcgaatgggatatgtcagatcctaataactgcccagagtcatttgcgatacag
ttctgctctgagctgggacttggaggagaattcgtaccaatcattgcatacagtatacga
ggtcagctggcatggcatcaaagaacgtatgcattcaggtaa

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