Trichinella spiralis: Tsp_06230
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Entry
Tsp_06230 CDS
T01609
Name
(RefSeq) synaptobrevin protein
KO
K08516
synaptobrevin homolog YKT6
Organism
tsp
Trichinella spiralis
Pathway
tsp04130
SNARE interactions in vesicular transport
tsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
Tsp_06230
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
Tsp_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_06230
Membrane trafficking [BR:
tsp04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Ykt6
Tsp_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Longin
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
10908281
NCBI-ProteinID:
XP_003378282
LinkDB
All DBs
Position
Unknown
AA seq
207 aa
AA seq
DB search
MKVFAIAVFYKSEPNAILLNGSFDLQSFSFFQRNSVRQFMVFTGKLIIDRSPIPNRTTVK
EQGYLCHVYIRADCLSGLVVTDEEYPSRVAHNLLSKVLEDFSAKVPPAVWKVDREPEHID
YNGLDSFLARYQDPRTADAMTRVQEELDETKIILHNTIQAVLERGEKLDDLVERSEEFCD
TLTVNWVSNGIVKNVQRSVQLCKYPIR
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgtttgcaattgcagtgttttacaaatctgaaccaaacgctatcctgctgaat
ggaagctttgacctgcagtcgttcagctttttccaaaggaacagtgtacgtcagtttatg
gtgtttacaggaaaattgataattgatcgtagtccgattccaaatcgaactaccgtcaaa
gaacaaggctatttgtgccatgtttatattcgagcagactgtttgtctggtttggtggtt
accgatgaagaatatcccagtcgagtggcgcacaatcttctcagcaaagtacttgaagat
ttcagcgccaaagttccgcctgctgtgtggaaagttgatcgagaaccagaacatatagat
tataatggtttggactcttttcttgctagataccaggatcccagaactgccgatgccatg
acaagagtacaagaagagctggatgaaacaaaaattatattgcacaacaccattcaagca
gttttggaaagaggagagaagctggacgacttggtagaacgctctgaagagttttgtgat
acactgactgtaaactgggtttcgaatgggatagtcaaaaatgtacagagatcagtacag
ctatgtaaatatccaataagataa
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