Trichinella spiralis: Tsp_06338
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Entry
Tsp_06338 CDS
T01609
Name
(RefSeq) putative metallo-beta-lactamase domain protein
KO
K13148
integrator complex subunit 11 [EC:3.1.27.-]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_06338
Spliceosome [BR:
tsp03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
Tsp_06338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_6
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
10908571
NCBI-ProteinID:
XP_003378410
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MPEIKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDF
IDCVIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLEDFRKVQVKYRNDPFI
FTSNMIKDCMNKVKTISLHEELMGDFNMTPDRHLGPAEIDRCRPDVLISESTYATTIRDS
KRARERDFLKKVHDCINNGGKVLIPVFALGRAQELCILLESYWERMNLSIPIYVSKGMAE
KAVDYYKLFVTWTSEKIKKTFVKRNMFDFKHVLPFEDSFADTPGPMVVFATPGMLHSGQS
LKIFKKWATNEKNMVIMPGYCVQGTVGSKLIAGVRKLDLENGATLEVKLSVEYMSFSAHA
DSKGIVQLIRNCDPRHVLFVHGEDSKMEFLKQKVERMLSIPVLKPRNGQNVAVNTIPSIV
IETSPQLLKDSLSNFNHPVDPDIFQASLFVDKNLKSIELLRSDEVLKRMEWEPHQVEFIL
DVGVCEGGLNCLLEQIQQEMYETGRFRSQFKSGTNDLIIDNEVILSVYSEKELRVVFQRG
KIGMVTKIMKILKDCTTLSLSP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgccagagataaagattgttccacttggtgcaggccaagaagttggtcgaagttgtatt
cttgtcactattggaggaaagaatgtcatgctagattgcggaatgcatatgggttttaac
gacgaacgtcgattcccagatttcagctatattactcagaaaggaaaattggacgacttt
attgattgtgtaattatcagtcattttcatcttgatcactgtggtgctttgccttacatg
accgagatggttggttataacggcccaatttacatgaccataccaaccaaggcaattgtg
cctgtgttacttgaagattttaggaaagttcaagttaagtatcgaaatgatccttttatt
tttacttcaaacatgatcaaagattgcatgaacaaagtgaaaacgatcagcttgcatgaa
gagcttatgggggatttcaatatgacaccagatcgacatctgggtccagcggaaattgac
cgctgcagaccagacgtgctgatctccgagtctacatatgcgacgaccattcgtgattca
aaaagagctcgagaaagggattttttgaaaaaagtgcatgattgtataaataatggtgga
aaagttttgattccagtttttgcgttgggtcgagctcaagaattatgcatcttgctcgaa
tcatactgggagcgtatgaatttgagcattccgatttacgtatcgaagggaatggcagaa
aaagctgtcgattattacaaattatttgtcacttggacaagtgagaaaattaagaaaaca
ttcgtgaaaagaaatatgtttgacttcaagcatgtattgccatttgaagattcatttgct
gacactccaggtccaatggttgtgtttgctactcctggaatgttacattctggacaatcg
ttgaaaattttcaaaaaatgggctaccaatgagaaaaatatggttatcatgcctggctat
tgtgttcaaggtacagtgggatcaaaactgatagctggagtgcggaagttggatttggaa
aacggcgctacattggaggttaaattgtctgtggaatacatgtcattcagtgcgcatgcc
gattccaaaggcattgttcagttgattcgaaactgcgaccccaggcatgtgcttttcgtg
catggtgaagactctaaaatggaatttttaaagcaaaaagtcgaacgtatgctgtcgatc
cctgtgttgaagcctcgaaatggacaaaacgtggcagtgaacacgattccatctatcgtc
atcgagacgtcgccgcagttgttgaaagattcattgtcgaacttcaatcatccagttgat
ccagacatatttcaagctagtctatttgttgacaaaaatttgaaaagtatagaactatta
cgaagcgacgaagtgctcaaaagaatggaatgggaaccacatcaagttgagtttattctt
gatgtgggtgtctgcgagggtggtttaaattgcttgctagaacaaattcagcaggaaatg
tatgaaactggtcgatttcgatcccaattcaaatctggaaccaatgacctcatcatagac
aatgaggtgattttgagtgtttatagcgagaaagagttacgtgtggtctttcagagggga
aaaataggtatggtaacaaagatcatgaagattcttaaagactgcacaacgttgagttta
tctccttag
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