Trichinella spiralis: Tsp_06393
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Entry
Tsp_06393 CDS
T01609
Name
(RefSeq) cleavage and polyadenylation specificity factor protein subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_06393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_06393
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_06393
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Tsp_06393
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Tsp_06393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf-CCHC
zf-CCCH_2
zf-CCCH_3
zf_CCCH_4
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
Lin-28A-like_zf-CCHC_2
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
10908836
NCBI-ProteinID:
XP_003378431
UniProt:
E5SFZ6
LinkDB
All DBs
Position
Unknown
AA seq
310 aa
AA seq
DB search
MTVEGAIWSVKMSYLERLNNASDVVFEVEKSLQSQQGLQPLPFPGMDKTGSAMCTFFRVS
TCRLGTLCPLRHVSGDKSIVCKHWLRGLCKKGDQCEFLHEYDVSKMPECFFYSKYNACSN
KECPFRHIDPESKLKDCPWYDRGFCRHGPHCKNRHRRRVMCLSFLNGFCPDGPKCLRSHP
NFDLPNADISSQRKQQSNFIVCHHCGEIGHKVSSCPNLTSGEGLHTNLPPFGRNFQAAPS
DQTRRPLQDVTCYKCGDKGHYANKCSRGTFAFLAPTAALSHEARLKDEHVTHANVPQQRL
QGRRAGEMKR
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgactgtggaaggagcgatttggtcagtcaagatgtcgtatttggaacggctgaacaat
gcgtccgatgttgtgtttgaagtggaaaaatcgttgcaatcgcaacaaggcttacaaccg
ctgccgtttcccggtatggacaagaccggctcggcgatgtgcaccttttttcgcgtgtcc
acttgtcgcctgggcactttgtgtccactgcgccacgtcagcggcgacaaaagcatcgtc
tgcaagcactggctcaggggtctgtgcaaaaagggggaccagtgtgaatttttgcacgaa
tacgatgtgagcaaaatgcccgagtgctttttctactccaaatacaacgcctgcagcaac
aaggagtgcccgttcaggcacatcgacccggaaagcaagctgaaagattgtccatggtac
gaccgtggattctgcaggcacggcccccattgcaaaaatcgacaccggcgtcgggtgatg
tgtttgtcatttttgaacggcttctgccctgacggaccgaaatgtctgcgctcacatccc
aacttcgacctgcccaacgccgacatttcgtcccagcgcaagcagcagtcgaatttcatc
gtctgccaccactgcggtgaaattgggcacaaagttagttcctgcccaaatttgacatcc
ggtgaaggattgcacaccaaccttcctccattcgggcgcaacttccaagccgccccttct
gaccaaacacgacgacccctgcaagacgtcacttgctacaaatgtggcgacaagggtcat
tatgcgaacaaatgttccagaggtacttttgcctttttggcaccgaccgctgcattgtcc
cacgaagctcgtctgaaagacgaacacgtcacgcatgcgaatgtcccacagcaacgattg
caaggcagaagagccggggagatgaagcgttga
DBGET
integrated database retrieval system
