KEGG   Trichinella spiralis: Tsp_06424
Entry
Tsp_06424         CDS       T01609                                 
Name
(RefSeq) WD domain, G-beta repeat-containing domain protein
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
tsp  Trichinella spiralis
Pathway
tsp03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    Tsp_06424
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tsp03009]
    Tsp_06424
Ribosome biogenesis [BR:tsp03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    Tsp_06424
SSDB
Motif
Pfam: WD40 WD40_Prp19 Utp13 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_RIG_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_Nup120_160 WD40_like UTP15_C Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_RSE1_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_WDR75_2nd DUF1137
Other DBs
NCBI-GeneID: 10909163
NCBI-ProteinID: XP_003378512
LinkDB
Position
Unknown
AA seq 1002 aa
MNTTTQHSQEFEIQRRFDPFYSGGATAVSPDGRLIYCSFGNVINVLNWDTGSVICRHIVR
QTIGSKEEEAAIVQFSLSCDGGTLAVAYENMLLKLWNLAADLKKCPNGKIVKIASRSCVH
CMAYGRHPDLAHMLVIGYSDGSVKVWDTESRSCIGGMKCKLGRITSVALLQLSDQTAKVV
FGTDTGGVCMWKYMGDDEKSNFTTLSFHSATVTTIIAMNNDQVLTASRDMTIVIWEARAH
LLRRSCALYEPVECAILITNDLLIFGGESGAVRFVNLNSGCVVDTNKLLLRSRIQAFHHC
RTSGPGTVCFAVTEDQNIYQLELNHDQNYCVQIRRQIAGNNGEVRCVAFLSNRLLLVATI
SNQLRMYDIESGDCHLIDGHSKTILTISTSSWSTELFVTGSEDGTARLWKLKPDTGQVQC
LSVYSGHVKSVTAVQLCHENAAEFPFLITASLDRTVKIFSLKRKLLFSDGSTARQERRAV
ETASMTVVAHNKSVCCVALSMRKMLLATGSFDQTVKLWQVVPGDRCELQAIGQSELHGRG
VSDVQFSPTDRLLASASGDCLLRLFSVDGSLVCLRTFQGHESPVLKLAIDGLRLISVDSH
GLLKLWSLRSGLCEKTYDAHDGAAQALAVAPPTSAADGTSKPTVIATGGDDCSTLVWRDV
TDERMEQAQQQRAKTLRHDQTLANLLESQRLSEALRLALHLRRPATVLRVLKEMNLGDQL
HSCLAELQADHLQSLLQYSAEWNTNSRYCHYAQSILRFVLTRHTPEQILSWPTVGQFLLA
WIPYTERHLQRIDRYKDQLPLIDFLLQSANVLPTLSPTDQCTSKLGKSDPLSATMHYYCL
YTSALFLLAASSSAQYASQQAMSAGQSVLYYKPRPYFEPSENGYKIQPAPPAIGGYGQAS
KPSFPAAHLGGFPIPLQQQQIQHDQLVSQNIASDEFGRGPEKPLVFVPPQPIVPYSNSIV
EEPSIPVVPGSYGGVPSPAYGLSTAVPLLAPYKNLKMQKATN
NT seq 3009 nt   +upstreamnt  +downstreamnt
atgaatacaacgacgcagcatagccaagagttcgaaatacagcgacgttttgatccgttt
tattcaggtggagcaacggcggtttctcccgatggacgcctcatctattgttcttttgga
aacgtcattaacgtcctcaactgggatactggctcggtgatttgtcgtcacattgttaga
caaacaattggctcgaaagaagaagaagcggcgattgtgcagttttcgttgagctgcgat
ggcggaacactggccgtggcgtacgagaatatgctgttgaagttgtggaatttggcggcc
gatttgaagaagtgtccaaatgggaaaattgtgaaaattgccagtcgctcttgtgttcat
tgcatggcttacggtcgtcatccggatctggcacacatgttggtcattggctatagcgac
ggttcagtgaaggtgtgggatactgaatcacgtagttgtataggtgggatgaagtgtaaa
ttgggtaggatcactagtgtggctttactgcaactttcggatcagactgccaaggtggtg
ttcggcacagacacgggtggagtttgcatgtggaaatatatgggcgacgacgaaaagtcg
aatttcaccacattgagttttcattcggctacggtgaccacaatcatcgccatgaataat
gatcaagtgttgaccgccagtcgggatatgaccatcgtcatttgggaagccagggcccat
ttattgcgcagatcgtgtgcactttatgaaccagtcgaatgtgccattttaataacgaac
gatttgttaatttttggtggtgaaagtggtgcggtgagatttgtgaacttgaacagcggc
tgcgtagtggacaccaataagcttttactcaggagtagaattcaagcgtttcaccattgc
cggaccagcggccctgggacggtttgcttcgccgttaccgaggatcagaacatctaccag
ctggagttgaaccacgatcaaaattattgtgttcagatccggcgacaaattgccggtaac
aacggcgaagtgcggtgcgttgcttttttgagcaatcgtctgcttttggtagcaaccatt
tccaatcagctgcgtatgtacgacatcgaatccggtgattgtcatcttatcgatggtcac
agtaaaaccatcttgaccatttccaccagtagctggtcgacggagctgttcgtcaccggt
tccgaagacggcaccgcccgtctgtggaaactgaagccggatactggacaagtccagtgc
ttgtcagtgtacagcggacacgtgaagtcggtaactgcggtacagttgtgccacgagaat
gctgccgaatttccgttcctgatcaccgccagcctggacagaacagtgaaaattttctca
cttaagcggaagttgttgttttcagatggttccaccgctagacaggagcgaagagcagtc
gaaacggcgagcatgacggtggtcgcgcacaacaagagcgtttgctgtgtagcgttgtca
atgcggaagatgttgctagctaccggctcgtttgaccagacggtgaagctgtggcaagtg
gtacctggcgacaggtgtgaattgcaggcaattggccagagcgaactgcacgggcgtggt
gtgagtgatgtgcagttttcaccgaccgaccgtctgctggcatcggccagcggcgactgc
ttgttacgcttgttttcagtggacggctcgctcgtctgcttgcgcacgttccaagggcac
gaaagccctgtactgaagctcgctatcgacggcctgcgcttgatctctgttgacagccac
ggcttgctgaagctctggtcgttgcgctctggtctctgcgagaaaacctacgacgcgcac
gacggtgcagctcaggcgttggccgttgccccgcctacctcagctgccgatggcacctcc
aagccgactgtcatagcgaccggcggtgacgactgttcgacgctcgtatggcgtgatgtt
accgatgaacgcatggaacaagcccagcaacagcgtgcgaagaccctgcgccacgaccag
acgctggcgaatctgctcgaaagtcagcggctgtccgaagccctgcggctggcgctgcat
ctccgccggccggcgaccgttctgcgcgttttgaaggaaatgaatcttggcgaccagttg
cacagttgcctagccgagttgcaagccgaccatttgcaatcgttgttgcaatattcggcc
gagtggaacacaaatagtcgatactgccactacgcgcagtcgatcttgcgctttgtgctc
actcgccacacccctgagcagatactcagctggcccacggttggacagttcttgcttgcc
tggataccatacaccgaacgacatttgcaacggattgacagatacaaagatcaactgccg
ctgattgattttctcttgcaatcagccaacgtgctcccaactttgtcacccaccgatcag
tgtacatcaaagcttggaaaatcagatcctctctcagctacaatgcattattattgcctg
tacacctcagcactgtttctcttagctgcctcttcatctgcccaatatgcatctcaacag
gcgatgtcagcaggacagtcagtactatattacaaaccccgaccgtactttgaacccagt
gagaacggttacaaaatacaaccagcaccgccggcgatcggaggttacggtcaagcctca
aagcccagcttccctgctgctcatttgggcggatttccaataccgttgcagcaacaacaa
attcaacatgaccaattagtcagtcaaaacattgcatcggatgaatttggaaggggtcca
gagaagccgttagtcttcgttcctccacagcctattgtaccatattccaatagcattgtc
gaagaaccttcaataccagttgttccaggttcatatggaggtgttccatctccagcatat
ggtttatcgacagcagtaccattacttgcaccgtataaaaatttgaagatgcaaaaagca
acaaattag

DBGET integrated database retrieval system