Trichinella spiralis: Tsp_06456
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Entry
Tsp_06456 CDS
T01609
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_06456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_06456
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_06456
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Tsp_06456
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
Tsp_06456
Pre-60S particles
Tsp_06456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IBN_N
CEP104-like_TOG
Cnd1
HEAT_GCN1
TPR_IPO5
Xpo1
HEAT_ULK4
Motif
Other DBs
NCBI-GeneID:
10908888
NCBI-ProteinID:
XP_003378481
LinkDB
All DBs
Position
Unknown
AA seq
756 aa
AA seq
DB search
MAVEMSAAEFQPQADELAQVLELLKQSQISDNAVQREVQKKLEELKKIPTFSYYLLYVLT
RMTDEQQVTRSLGGLILKNNIHAAWSTYTDEAKRYVKAECVHALGESNQMVRTTVDVVIA
SILSQESIHAWPDLVVKLLDQLHSDQDQVVVGAFSVVQKICEDSAFYQVEDREYALRTLM
PALVGLLLHQNVKVRLMCLQSVNFFLGIRSPFLDHFIDDRFLARLFNCMNDSEQSIHDCL
CQALSLLCNLYFNKLTNYMPTVARYILHRTSDSVEHTALEACEFWLTLAEEPANCREVVR
PYLAELIPVLVRRMRYSEQDLRNMKADLECDELIPDRTEDIQPRFRRSKPQQQQQDANSM
SNVDDGINNIHSSNRQWMRFFGRRVVRMERTQRIRGNVGRAVERVQRRAASAFVANFGRR
SVPTGLAGQRGGHIGVGRRGRRLRERHGTPLAHSGPLFDRLFERFESVGQVDHLLDVESL
WSLDIAISERTPFRTVAQRTVGSAVGREQASPGGGVQRVRHAGRGGEFRTGPIFERSGAD
VVRRVRKIPGEKFAHTVRRGRHAGRIDRHLSRQTGAGRRADAAPDGQMEPHRRHRTGTLF
AVGMHGQRGGRVAGQFSPLFHVGIFALCPLDQLQRRNGNGRFDARLRLWIGIRQHRLGPV
DPGCRSRRPGFRDRVVGLAQRHGRNARPAAHQSGRPLQFGRIGQADVARPVVRSETEFVR
VGRRFGAHLLATCRTARHVLFDRSGTQFGTAPSVGL
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggaaatgagcgcggcagagtttcaacctcaagccgacgaactggcccaagtg
ttggaattgctgaagcagtctcagatcagcgacaatgccgtccagcgagaagttcagaag
aagttggaagagttgaagaagattccgacgttttcctattatttgttgtacgtgttgacc
agaatgaccgacgagcagcaggtgacccgctcgttgggcggtctgatattaaaaaacaat
atccacgccgcttggtcgacttacaccgacgaggcgaaacgctacgtgaaagccgaatgc
gtgcacgcgttgggcgaaagcaaccaaatggttcgcactacggtcgacgtggtcattgcg
agcatcctgagtcaggagagtatacacgcttggccggatcttgtggtcaaattgctcgac
cagctccacagcgaccaggatcaggtcgtggtcggcgcgttcagtgtggtgcagaaaata
tgcgaagacagcgccttctaccaggtcgaggaccgcgaatacgcgctgcgcaccttgatg
ccggctctggtggggctgctgttgcaccagaacgtgaaagttcgcctgatgtgcttgcag
tcggtgaactttttcctcggcatacggagtccatttttggaccacttcatcgacgaccgt
tttctggctcgcctgttcaactgcatgaacgattcggaacagtccattcacgattgcctg
tgtcaggcgttgtcgttgctttgcaatttgtacttcaacaagctgaccaactacatgccc
accgtggcccgctacatactgcacaggaccagcgattcggtcgaacacaccgccctggag
gcgtgcgaattttggctcacgctggccgaagagccggccaattgccgcgaagtggtcagg
ccttatttggcggaattgattcctgttcttgtgcgacggatgcgctattcggaacaagat
ttgcgcaacatgaaagccgacttggaatgcgacgaactaatcccagaccgtaccgaagat
attcagccgagatttcgtcggtccaagccacaacaacaacaacaagatgcgaattccatg
tccaacgtggacgatggaattaataatattcacagcagtaaccgtcagtggatgcgattt
ttcggtcgacgcgtcgtcagaatggaacgtacgcaaaggatccgcggcaacgttggacgt
gctgtcgaacgtgttcagagacgagctgcttccgcatttgttgccaattttggacggcga
tctgttccaacaggactggctggtcaaagaggcggccatattggcgttgggcgccgtggc
cgaaggctgcgcgaacggcatggcaccccacttgcccactctggtcccctatttgatcgg
ttgtttgaacgattcgaaagcgttggtcaggtcgatcacttgttggacgttgagtcgtta
tggtcattggatattgcaatttccgaacgaacgccatttcgaacagttgctcaaagaact
gttgggtcggctgttggacgtgaacaagcgagtccaggaggcggcgtgcagcgcgttcgc
cacgctggaagaggaggcgaatttcgaactggtcccatatttgaacgaagtggtgcagac
gttgtgcgccgcgttcgaaaaataccaggcgaaaaatttgctcatactgtacgacgcggt
cggcacgctggccgaatcgatcggcacttgtctcgccaaaccggagctggtcgacgcgct
gatgccgcccctgatggccaaatggaaccgcaccgacgacaccgaacgggaacgctattc
gctgttggaatgcatggccagcgtggtggtcgcgttgcaggacaattttctcccctattc
cacgtcggtattttcgcgctgtgtccacttgatcagttgcaacgtcgaaacggcaacggc
cgatttgatgctcggctccggctctggatcgggatccgacaacatcgtctcggtcccgtc
gacccagggtgtcgaagtcggcggccaggatttcgtgatcgcgtcgttggacttgctcag
cggcatggtcgaaacgctcggccagcagctcatcagtctggtcgcccattacaatttggt
cgaattggtcaagcggacgtcgctcgaccagtcgtccgaagtgagacagagttcgttcgc
gttggtcggcgatttggcgcgcacctgctggccacttgtcgaaccgcacgtcatgtactt
tttgaccgttctgggacgcaatttggaaccgcaccaagtgtcggtctgtaa
DBGET
integrated database retrieval system
