Trichinella spiralis: Tsp_06560
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Entry
Tsp_06560 CDS
T01609
Name
(RefSeq) photoreceptor-specific nuclear receptor
KO
K08546
nuclear receptor subfamily 2 group E member 3
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsp03000
]
Tsp_06560
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tsp03310
]
Tsp_06560
Transcription factors [BR:
tsp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
Tsp_06560
Nuclear receptors [BR:
tsp03310
]
2. Hepatocyte nuclear factor 4 like
2E. Tailless like receptor
Tsp_06560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
10909850
NCBI-ProteinID:
XP_003378710
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MFETFVEENNDNSSKKSNIRGVENSKSSYCKTTGHIPLNYMSPSAFSPLPLPSNSFPTSF
LSTNFGSTVHTVRELVRSSKTASESQMESPLGTMIIQPTPGTIVNHTYSAFKTNTSSSSE
RKSSPLLVCSVCGDASSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGSCLVDKTHRN
QCQACRLKKCIEMGMNKDVQNERQPRNTATVQPTMEMSMGLMANERALREYANAVSAAFS
GGSTVAIAPTLCSAYFMPPTSTPCTGDLLVSVVGPNRPEFAVNSISNDRATSAKTKFATN
LPNAELIPQTTDTIRQIGNVNSDDTADVDRSGNAESGDCKSAENDLNYATSPVQDSVYET
SMRLLLMVVKWAKSLPSFMALSFRDQVILLEESWSDLFLLTLYQWSMPMGSSALLSHSSF
VQFAGGINSNIFRPSDLRYLQDLLARFRSCALDPAEFVCLKAIALFRPEARGLKDPAQIE
LLQDQAQYMLIQHTQISQPNPAQRFGRLLLMLPLLRTVGTEKIEILFFNHGIRCMQMEKI
LCDMYKS
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaacgtttgttgaagagaacaacgacaacagcagcaaaaagtcaaatatcaga
ggtgtggaaaattccaaatcttcttattgcaaaaccaccggacatattcctttgaattac
atgagtccgagcgcattttcaccattgccactgccttcgaactcatttccaacttctttt
ctcagcacaaactttggatccactgttcacacggtcagagaattggtcagaagttccaaa
acggcttccgaaagtcagatggaatctccacttggaacaatgatcatccaacctactcct
ggaacaattgtcaatcatacgtattccgcttttaaaacaaacaccagctcttcttctgaa
aggaaatcttctccactacttgtttgttctgtctgcggcgacgcatcatcaggaaaacat
tatggaatattggcatgcaacggatgttctggatttttcaaacgtagtgttcgtcgtaag
cttatttacagatgtcaagctggaacgggaagttgtttagtagataaaactcatcgcaac
caatgccaagcatgtagattgaaaaaatgcatcgaaatgggaatgaacaaagatgttcaa
aacgagcgtcagccacgtaatacggctactgtgcaacctacgatggagatgagcatgggt
ctgatggccaacgaaagagctttacgtgaatacgcgaatgcggtgtcagccgcattcagc
ggaggatcgacagtcgcgattgcccccaccctttgctctgcttacttcatgccgcctacg
tcgaccccgtgcactggtgatctgcttgtcagcgtagttggaccaaatcgtccagagttt
gctgtaaattcgatctcaaatgaccgtgcaacaagtgcaaagacaaaatttgcaacaaat
ttaccaaatgcagaattgataccccagacgacagatacaattcgccaaatcggcaacgtc
aactctgacgatacagcggatgttgatcgcagtggcaatgctgaatccggtgattgtaaa
tctgcagaaaatgacttaaattatgccacttctcctgtacaagattccgtttatgagact
tccatgagattgttgctcatggtcgtcaaatgggctaagagcttaccttcgttcatggca
ctttcgtttcgagatcaggtgattcttctggaagaaagttggagcgatttatttctactc
acactttaccagtggtcaatgccgatgggaagttcagctctgctatcccattcgagcttt
gtacaatttgccggaggcatcaattccaatattttccgcccatctgatttgagatatttg
caagatttgctcgcgcgattcagaagctgcgctctcgatcctgcagaatttgtctgctta
aaagcgattgcactttttcgaccggaagcgcgaggtttaaaagaccccgcacaaattgaa
cttctccaagatcaagcgcagtacatgctcatccagcacactcagatcagtcaaccaaat
ccagctcaacgattcggaaggttgctgttaatgcttcccctgttgcgcacagtcggcact
gagaagattgaaattctcttcttcaaccacggcatacgatgcatgcagatggaaaaaata
ttatgcgacatgtacaaaagttga
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