Trichinella spiralis: Tsp_06600
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Entry
Tsp_06600 CDS
T01609
Name
(RefSeq) putative ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_06600
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_06600
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
Tsp_06600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
PROPPIN
Helicase_C
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
RMC1_N
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
10909810
NCBI-ProteinID:
XP_003378670
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MKNLRGTTFNSFNLDYRILKVMNYYPYMFHERYFEVLRVAQMAVKLLGWKKPTLIQEKFI
PLALQGKDIVSRARTGSGKTAAFSIPIIQKILEEKQSSGMQCIRAVVLAPSRELAKQLCD
HINSLCQFLTPEIQCVDLVIAEHAVAQRFSLNSNPDIVVSTPSRLLAQLKQNNLSLRETL
KYFVVDEADLVLSYGYESEITEIISYLPNNYQAFLTSATMNENVKLLKKLTLHNAVILKI
EEAQLPAADQLTQYHIRCHIVQQFNSGLYDTIIASDEISVESPEERKQSGTIIKLEKKES
TASRGIDFNQISNVINFDFPKTVEEYIHRVGRTARAWNQGTALSFSTKREAKFVSRVKKA
LAKQYEGEFLKPYRINMEELDGFHYRCLDALRAATTLAVKEARLKEIREEVLKSTKLKSY
FVENPRDLQLIRHDRIFKRNRSLKHLKHVPEYIVPKSLRGVPVKSVQNDDDDDSVEHEEK
DHLKSSDRITKPSLLQRKRKAYRERCAAKRKADPLESFNFCYNIISSIFLFFNKPICEYI
GEKSVVVIVVVDFVELKMAPKIQYLRFNDSQGEVSNYFICALNTGLRVYNTDPFMEVIHL
DEATAGSVKLCCLLQRSNIVALVCNGPNGKFSENSVVIWDDKKRKFILEIECPSEVVAVR
MSAANLIIVLLSEVHVYTFPGQPNLIASFDTRDNPKGICSMNSDPEVEYFAFPGHRIGTL
LLLNLKQLTQSESTSPLSIKAHSSDIACISLNNAANLVATASEKGTLIRIFNVQKKMKIL
EFRRGSDPALIYSIKFSLDSSFLCTTSDKGTIHIFSVKDPNLNQRSTLQKVGISGAYAES
QWALAKFSVGSKYPCYCCFGKESTVIAVCMDGSYYKLGYDDSGTCTQLEYEFFLGTTEDT
NFWASYKEE
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatttacggggaacgacttttaattcatttaacttagactatcgtattcttaag
gtaatgaattattatccgtacatgtttcatgaaagatattttgaagtgctgcgtgttgca
caaatggcggtgaagttgcttggttggaaaaagcctactttgattcaagagaaatttatt
ccattagctttgcaaggtaaagacatcgtttcacgagcacgaactggatcagggaaaact
gcagcattttcaattccaataatacaaaaaattttggaagaaaaacaatcatctggcatg
caatgcatacgtgctgttgtacttgctccatccagagaacttgctaaacaactgtgcgac
catattaatagcctttgccagtttcttaccccagaaatccagtgcgtcgatcttgtgatt
gcagagcatgctgtagcccaacgattttcgttgaattctaatccagacatcgttgtcagt
actccaagtcgacttttagctcagctgaaacaaaacaacttgtctctacgtgagacactt
aaatattttgtagttgacgaagcggatttagtgctttcttatggatatgaatctgaaatc
acagaaattattagctatttacctaataattatcaagcatttttgacatctgctactatg
aatgaaaacgtgaagttattgaaaaaattgactttgcacaacgcagtgattttgaagatt
gaagaagctcagcttcctgctgcagatcaattaacacaataccacataagatgccacatt
gtgcaacagtttaacagcggtttgtacgacactattattgccagtgatgaaatttctgta
gaaagccctgaagagaggaagcagagtggaacgattattaagcttgaaaagaaagaatca
acagcttcacgtggaattgattttaatcagatatcaaatgtgattaattttgattttcct
aaaacggttgaagagtatatccatcgtgttggaagaacagctcgagcttggaatcagggt
actgccctttcgttttctacaaagcgtgaagcgaaatttgtatccagagtgaagaaagca
cttgcaaaacaatatgaaggggaatttttgaaaccatatcgtattaatatggaagaattg
gacggctttcattacaggtgtttggatgctttacgtgcggctacaactctcgcagtgaaa
gaagctcgactgaaagaaataagagaagaagttttgaaatcgacaaagttgaaaagttat
tttgtcgaaaatcctcgagatctgcagctgataagacacgataggatcttcaaacggaat
cgcagtcttaaacatttaaagcatgttccagaatatatcgttccaaaatctttgagaggt
gttcctgttaaatctgttcaaaacgacgacgacgacgactctgttgaacatgaagaaaag
gatcatttgaaatccagtgacagaatcactaagccatccctgctgcagcgtaagcggaaa
gcgtatcgagaacgttgcgcagcgaaacgaaaggccgatcctttggaatcattcaatttt
tgttataatattatttcaagtatatttttgtttttcaataagcctatatgtgaatatatt
ggagagaaaagtgttgttgttattgttgttgttgattttgttgaattaaaaatggcaccc
aaaattcaatacctccgattcaatgatagtcaaggtgaagtgagcaattatttcatatgt
gcattgaataccggcttgcgagtttacaacacagatccttttatggaggtgattcatctc
gacgaagctacagctggcagtgttaaattgtgttgtcttttgcaacgcagcaatatagtg
gcgttggtttgcaacggaccgaatggaaaattttcagaaaattcagttgtcatctgggat
gataaaaagaggaaatttattttggaaattgaatgtccatctgaagtggttgccgtgcgc
atgtctgcagcgaatttgatcattgttctgctttctgaagttcatgtttatacatttcct
ggtcagccgaatttgatagccagctttgatacacgcgataatccaaaaggcatttgctcg
atgaattcagatccggaggtggaatattttgcttttccagggcatcgtattggcactctg
ctgttactgaatttgaagcaattgactcagtcagaatctacctctcctttgtctatcaaa
gcgcacagctcagacattgcatgcatatcattgaacaatgcagctaatttagtcgccaca
gcgtctgaaaaaggaacactgattcgcatttttaacgttcagaagaaaatgaaaattttg
gaatttaggcgtggctctgatccagctttaatttacagtatcaaattcagcttggattcg
tcatttctttgtactactagtgacaaaggaacgatacacatcttttctgtcaaagatcca
aacttaaatcaacgctcaacgttgcaaaaagttggcatcagtggcgcatacgctgaatct
caatgggctttagcaaaattttctgttggttccaagtatccttgctattgttgttttggc
aaagaatccacagtgattgcggtttgtatggacggctcttactacaaattgggatacgat
gacagcggtacttgcacacagcttgaatatgaattttttctcggaaccaccgaagacact
aatttttgggctagttacaaagaagaataa
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