KEGG   Trichinella spiralis: Tsp_06623
Entry
Tsp_06623         CDS       T01609                                 
Name
(RefSeq) putative integrin alpha pat-2
  KO
K06584  integrin alpha 8
Organism
tsp  Trichinella spiralis
Pathway
tsp04512  ECM-receptor interaction
tsp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    Tsp_06623
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    Tsp_06623
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:tsp04515]
    Tsp_06623
Cell adhesion molecules [BR:tsp04515]
 Integrins
  Integrin alpha subunits
   Tsp_06623
SSDB
Motif
Pfam: Integrin_A_Ig_2 Integrin_A_Ig_3 FG-GAP Integrin_A_Ig_1 FG-GAP_3 FG-GAP_2
Other DBs
NCBI-GeneID: 10909544
NCBI-ProteinID: XP_003378647
LinkDB
Position
Unknown
AA seq 1101 aa
MFPLTVRLVKLTLECFNFLLIGAPKAESGQPGVRRGGAVFRCETKDQRCTKIFFDTAGHA
RALNGSVLLQIDSKSDQWFGATVVSSKKGDAVLACAPRYTYFYSTFDRKEPVGTCYLAQD
NFSSFREYAPCRIETRWGYHRLGSCMAGFSAAISDLYKHYVQFQQENKLYIGAPGAWYWQ
GSLVMQEIGRDDMVKRTSEGPAYLDDTYMGYSMAVGDFKGNSDNHVAVGVPKGNFLTGMV
VLFDSNLKVLQNITGHQVGSYFGAALAVGDFNDDGLDDIAIGAPLFIGMENKQLDKSQTE
GKYEVGAVYVYFQDKQHHFVKYTTLVGLKEWSRFGHDVAAVGDLNGDSFDDIVIGAPYDG
EDRKGAVYVYHGMKDGIKEKFSQVIYARDIDPSLRTFGWSVTGGVDIDNNDYPDVLVGAY
SSDRSVLFRTRPVVSVSGFVKILLIWKISFVGFFEQKMLHDFRIIVSLDPKKGISSRARF
LESHSVTQLTLDSVPIRKGERWCERRYVYVLDDIRDKLSPITVQVNYSIVDEGYMERQLR
PVMDAYIPSMISGEINIQKDCGKDNICIPDLQMTAKLNRESILIGADDRFNVSVVIHNAL
EDAFEAQFFIVAPVGLDYEGFTRQMPSRPITCSQPKELNNGKNYVIACDVGNPLPKSSTV
RFSMQFSTENLDLVMGGISLNLTTNSTNNETERTLVDNEVLLVIPMEVKADFIVTGVSRN
ESYHYDFNDRRDDFVFDSDAGPVVSHVYEIRNLGPSTLSEMSVDVYWPSYFVDNAKPLLY
LIDDIETEGKITCELLQKGHINSEGLIIVPRPEDAIERVFRVKRQEKANSRQRYEEKSDV
LKALRNAMALMKQSLGDFGNAFGQMRNVLQRVRLVIDCRLKIASKRISYGINCMEMACSQ
WQCKIKDFKKDERVLLKVDSRLWLNTLIDEVFYDAMISSLVIAEVTKLPYRHPTIELPLR
YAVASTIVNPKDPTRVSRGVPTWLIFVAILAGLTSLILLIMLLWKFGFFKRKRPPRGQAL
LSKPPEPEYYGYSSYSSAQTPGGYTTYGNPHYEQTLYHLTAPTKVQSSCRACCMHVLMYY
ICHRVCLRMIAKNEWGSRQMN
NT seq 3306 nt   +upstreamnt  +downstreamnt
atgtttccactaactgttcgtctagttaagctaactttggagtgcttcaacttcttatta
attggtgccccaaaagctgaatcaggccagcctggagttcgacgtggtggtgcagttttt
cgttgtgaaaccaaagaccaacgatgcactaaaatattttttgataccgctggacatgcc
cgtgctctgaatggttcagttttacttcaaattgattctaaatctgatcagtggtttgga
gcaacggtggtgagctcaaaaaaaggtgatgctgttctggcttgtgccccacgttataca
tatttttattccacttttgatcgtaaagaacccgttggaacgtgctatttagcacaggat
aatttcagctcttttcgagaatacgctccttgtcgaatagaaacaagatggggttatcac
cgtttaggttcctgcatggctggattcagcgctgccatttcagatctttataaacattat
gttcaatttcagcaagaaaacaagctgtacattggtgctccaggtgcctggtattggcaa
ggatcacttgttatgcaagaaattggtcgtgacgatatggtaaagcgtacatctgaaggt
ccagcatacttggatgatacatacatgggctattcgatggctgtgggagattttaaaggt
aattcagacaaccatgttgctgttggtgtaccgaaaggaaattttcttactggaatggtt
gttctgttcgacagtaatttaaaagtattgcaaaatattactggccatcaagttggttca
tattttggagctgcactagctgttggagatttcaatgacgatggtttggatgatattgct
attggtgcgccgctatttattggcatggagaacaaacagctcgataagagtcaaacagaa
ggaaaatatgaagttggagcagtatatgtatactttcaagacaaacagcatcattttgtg
aaatacaccacattggtgggacttaaagaatggtcacgctttggtcatgacgtagctgca
gttggagatctgaatggcgattcattcgatgatattgttattggcgcaccatacgatggt
gaagatcgtaaaggtgctgtatatgtgtatcatggtatgaaagatggaattaaagaaaaa
tttagtcaagttatatacgccagagatattgatccatctctaagaacgtttggctggtca
gtcacgggaggtgtcgacattgataacaatgattatcccgatgttcttgttggagcttac
agttcagatcggtccgtattgtttaggactcgtccggttgtttctgtatctgggtttgtt
aaaatactgttaatttggaaaataagctttgtcggctttttcgaacagaaaatgttacat
gattttcgtattattgtcagtttggatccaaaaaaaggaatcagtagtcgagcacgtttt
cttgaaagccacagcgtcactcaactaactttggattctgttcctattcgtaaaggagag
cgatggtgcgagcgacgttacgtttatgtcctagatgacattcgggataagcttagtcca
attacagttcaagtaaattacagtattgtggatgaaggatacatggaaaggcagctgcgt
cctgtcatggatgcttacattcccagtatgatttctggagaaattaatattcaaaaagac
tgtggaaaagataatatttgtattccagatttgcagatgactgctaaattgaatcgcgaa
tccattttaattggtgctgatgatcgatttaatgtatcagtggtgattcacaatgcttta
gaagatgcattcgaagctcagtttttcatagttgctccagttggtctagattatgaaggt
tttacacgtcaaatgccttctcgtcccattacttgttcacaaccgaaagagttgaataat
ggaaaaaattacgtcattgcttgtgatgttggtaatccgcttccgaaatcatcgactgtg
cgattcagcatgcagttttcgacagaaaatttagatttagttatgggaggaattagttta
aatctaacgacaaacagtaccaacaatgaaactgaaagaacgctggtagacaatgaagtg
ttgttggtcattcccatggaagtaaaagctgattttattgtcactggggtatcccgaaat
gaatcgtatcactacgactttaacgaccgtcgagatgattttgtttttgacagtgacgct
ggacctgtggtttcacatgtttatgagataagaaatcttggaccttcaacattgtctgag
atgtcagtagatgtttattggccaagttattttgtggacaatgcaaaaccattgttgtat
ttaattgatgatattgaaactgaagggaagatcacttgcgaacttttgcaaaaaggccat
ataaattcagaagggttaataattgttcctcgtccagaggatgctattgaaagagtgttt
cgagtgaaacgtcaagaaaaagcgaacagccggcaacggtacgaggaaaaatctgacgtg
ctgaaagctctccgtaatgcaatggctttgatgaagcaaagtttgggtgatttcggtaat
gcatttggtcaaatgcgtaatgtactgcagcgtgttcgactggtgatagattgtcgttta
aaaatagcatcgaaaagaatatcttatggaataaattgcatggaaatggcctgttcacaa
tggcagtgcaaaataaaagattttaagaaagatgaaagagttctgttgaaagtggattct
cgcctttggctcaacacattaattgatgaagttttttatgatgcaatgatatcatcactt
gtaattgcggaagtaacaaaactgccctacagacatcccacaattgaacttccattacgt
tatgctgttgcaagtacgatagtaaatccaaaagatccaactcgtgttagtcgtggtgtg
ccaacttggctaatatttgttgccattttagctggtttaacaagtcttattctgctcatc
atgcttttatggaagtttggattcttcaagcgtaagcgacctccacgaggacaagctcta
ctgtccaagccgccagagccagaatattacggatatagtagttatagcagtgctcaaacg
ccaggtggatataccacatatggaaatccacattacgaacagacactatatcatttgaca
gcaccaacaaaagtacagtcgtcatgtcgtgcatgttgtatgcatgtacttatgtattat
atatgtcatcgtgtatgtttgcgtatgatcgctaaaaatgaatggggcagcagacaaatg
aattga

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