Trichinella spiralis: Tsp_06709
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Entry
Tsp_06709 CDS
T01609
Name
(RefSeq) glucose-repressible alcohol dehydrogenase transcriptional effector
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tsp_06709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_06709
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Tsp_06709
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Tsp_06709
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Tsp_06709
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
10911736
NCBI-ProteinID:
XP_003380551
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MDGKPVAGSTSTPKSSAESKKESSTDRRDLDRNGDLDVYSMQNGSLRVHKYLTAEELAAG
KTTSWAEIELRALHGNPLSPELNQVYHHPTTSVKVLQYFLVQLCARALPPPERPWIRTDV
GDKDHKFIFTVMCYNVLCEKYATPSQYPYCPSWALNWDYRRRMILSEIRSYEPDEVETEQ
FYSFFVPELKRFGYAGIFSPKSRAKTMTEDERKFVDGCAIFWKSSKYITAIPLAFSFHVK
LLFRFELEKKHLIEFTQLAIANANGCQQMLNRVMTRDNIALAAVLQPTTCVLRNNSSHWH
TKNNCIPLIVCTAHIHWDPEFCDVKLVQTMMLVQELGYLVDSVAQQRHLTTDQIPLLVCG
DLNSVPASGVYEFLATGKIACDHPDFKDFRGTTCLQKLSSTKDTNNYAHQMKLETAYDSS
MISFTNFTLDFKGIIDYVFSTPSSLLRLGVLGAVDITWILESKYMGCPNPSIPSDHIPLL
VQYAIIPQNIPDNETTDSKRSTCYALPERLYSR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggatggtaaaccggtagcgggctcgacatcgacaccgaagagcagcgccgagtccaaa
aaggaatcaagcactgatcggcgtgatttggacagaaatggtgatttggatgtctattca
atgcaaaacggctctctgcgagttcacaaatatttgacggccgaagagttagctgctggc
aaaacgacgagctgggctgagattgaactccgtgccttgcatggtaaccctctcagtcct
gaattaaatcaagtctaccatcatccaactacgagtgtaaaagtattacagtatttcctc
gtgcagttgtgcgctagagcgttgcctccaccggaaaggccgtggatacgtacagatgtt
ggtgacaaagatcacaaattcatctttacggtgatgtgttacaacgtgctttgcgaaaag
tacgctactccatcccaatatccctattgtccatcttgggcactgaattgggactatcgc
cgacggatgatattgagcgaaattcgcagttacgaaccggatgaagtggagacggagcaa
ttttattcattttttgtacctgaattgaaacgatttggttacgccggaatattttcacca
aaatcacgggccaagaccatgactgaggatgagcgaaaatttgtcgacggttgcgcgatt
ttttggaaatcatcaaagtatatcacagcgattccattggcgttttcttttcatgtaaaa
ttactgttcagatttgaattggaaaagaaacatctgattgaattcactcaacttgctatt
gcgaacgctaacggctgtcagcagatgctcaatagggtaatgaccagggacaacatcgcg
ttagctgcggtacttcaaccaactacgtgtgtattgcgtaacaattcatctcactggcat
accaaaaataattgcattccgttgattgtgtgcacagctcatatacattgggatcctgaa
ttttgtgacgtcaaattggtacagacaatgatgttggtgcaagaattgggatacttggtt
gattcagtggctcaacaacgtcatctgactactgatcaaattcctttgcttgtttgtgga
gatttgaattccgtacctgcttctggtgtctatgaatttctggcaaccggtaaaattgca
tgcgatcatccggattttaaggatttccgaggtacgacgtgcttgcaaaagctgagctca
acgaaagatacaaacaattatgcgcatcagatgaaactagaaaccgcctacgattcttcg
atgatctcgttcaccaacttcacattggacttcaaaggcatcatcgattacgttttctct
acaccatcctctctgcttcgattgggtgttcttggagcagttgatataacttggattttg
gaaagcaaatatatgggatgtcctaatccgagcattccatctgatcatatccctctgtta
gtgcagtatgccattattcctcagaatattccggataatgagacaacagattctaagcgc
agtacttgttatgcgttgccagagcggctctacagccgctga
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