Trichinella spiralis: Tsp_06737
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Entry
Tsp_06737 CDS
T01609
Name
(RefSeq) ATPase, AAA family
KO
K10754
replication factor C subunit 1
Organism
tsp
Trichinella spiralis
Pathway
tsp03030
DNA replication
tsp03410
Base excision repair
tsp03420
Nucleotide excision repair
tsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tsp_06737
03410 Base excision repair
Tsp_06737
03420 Nucleotide excision repair
Tsp_06737
03430 Mismatch repair
Tsp_06737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsp03032
]
Tsp_06737
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_06737
DNA replication proteins [BR:
tsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Tsp_06737
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Tsp_06737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
RuvB_N
AAA_22
Rad17
AAA_14
nSTAND3
AAA_16
AAA_5
AAA_19
AAA_17
AAA_assoc_2
AAA_33
BRCT_2
Motif
Other DBs
NCBI-GeneID:
10911845
NCBI-ProteinID:
XP_003380579
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MHFIIMLVSCKLIDVSIKFIVALCASYYLSSTMLEEKKKIPPDNKKTIDSNDGKKAATKK
KPVQLAESVEKKGGGKDGKSTMNKKSCSPKTPVKNDSSVETPKKVKQTSKPATPSSSAEK
RKGKDENEKLSGRPSFGYQRFLQREGPRALGTREIPKGAENCFQGLTFVLSGILETVDRE
DVKLLIQKYGGRVTGASKISGTPKKKAKVMIDEISSDVKLDSTADGGQAVMWVDKYKPKS
IKQVIGQHGPKSCLNKLLNWLRHWNHYHGDGQRKKSVDKRSSHATDDGAQFKAALLSGPP
GIGKTTTAQLCCQELGIPYLELNASDSRNKKLIEEHFSESIKSRSVDQYFRVNSNDGTER
RSSSTFFDHVLIMDEVDGMSGNEDRAGVQELIDLIKRTRSALMTVAYKEGLKIPPQALDQ
LIEGANHDIRQVLHHLSLLAAQNRGIDFDQARQAALQAKKDTTQNIFESTRLLFKYSDGS
QKSSFDDRMELFFSDYSAVPLFVQENYLNCVPKDAVDQLQKMELFSDAAELIALGDIVDR
QIRTLSNWSLLTVQGMFSTALPCELLKGFMQGQIAFPAWFGKNSKYSKLKRILQQLSTHM
TLHISATSDDLNVDYLPRLRSAVVKLLVDNDAKGAVEQCQAYDLTREDVEAMMELGIWPN
RPDPMSSVASKSKAAFTRAFNSSNHLLPYSNDAAVVGRRKKMLSAAFDGIQEEAEDPFDN
GEKNRMKNPPSDSEDEEDASVEMFRVFDKRIILHLRGSEATVFFVCCNFRREHS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgcattttattatcatgcttgtatcgtgcaaactaatcgatgtatctatcaagtttatt
gttgcactttgtgcgtcttattatctctcatctacaatgttagaggaaaagaaaaaaatt
ccaccagataataaaaagacaattgattcgaatgatgggaagaaagcggcgacaaaaaag
aagccagttcaattagctgaatctgtcgagaaaaagggtggaggaaaagatggaaaaagt
actatgaataaaaaaagttgttcaccaaaaacgccagtcaaaaatgattcttcagttgaa
acgcccaaaaaagtgaaacaaacatcgaaaccagccactccctcttcatctgctgaaaaa
agaaagggaaaagatgaaaatgagaaattgtctggaagaccatctttcggatatcagcga
tttttgcaacgtgagggtcctcgagctttgggaactcgagaaattccgaagggtgccgaa
aattgtttccaaggattgacatttgtacttagtggaattttggaaacggtcgatcgagag
gatgtgaaattgttgattcagaaatacggtggccgagttacaggcgccagcaaaatttct
ggaacaccgaagaaaaaagcaaaagtgatgattgatgaaatttcgtcggatgtgaaattg
gattcaaccgccgacggtggtcaagctgtcatgtgggtggacaagtacaagccgaaatca
ataaagcaagtcattggtcagcatggtccgaaaagttgtctcaacaagcttctgaactgg
cttcgccattggaaccactaccacggtgatggacagaggaaaaaatcagtggacaagcgt
tcttctcatgctaccgacgacggtgcccagttcaaggctgctttgctctctggtccccct
ggcattggtaaaaccaccactgctcaactctgctgtcaggagttgggtataccgtacttg
gagttgaacgcttccgattcaagaaataagaaattgatagaagagcatttttctgaatcg
atcaagtcacgttcagttgatcagtattttcgcgtcaacagcaacgatggaaccgaacga
cggtcgtcgagcacgttcttcgatcatgtgctcatcatggacgaggtggacgggatgagc
ggcaatgaagatcgtgccggcgtccaagagttgatcgacttgatcaaacgcacccggagc
gccctgatgactgtagcttacaaggagggattgaaaattccaccccaagctttggatcaa
ctgatcgaaggggccaatcacgacatccggcaagtgttgcaccatttgagcttgcttgcc
gctcagaatcgtggcatcgatttcgaccaagctcgtcaagcggctttgcaagccaaaaaa
gatacaacacaaaatattttcgaatccactcgtctgcttttcaagtattccgacggcagt
cagaaaagcagtttcgacgatcgtatggaactgtttttttcagattattctgccgtccca
ttgtttgtgcaagaaaattacttgaactgcgtgcccaaagatgcggtagatcagcttcag
aagatggaattgttcagcgatgcggctgagctgatcgctttgggcgacattgtcgacaga
caaattcgtacactttccaattggtcattgcttactgtgcagggtatgttttctacggca
cttccgtgcgaactgttgaaaggttttatgcaagggcagattgcttttccagcttggttt
ggaaaaaattccaaatattccaagttgaaacgcatcttgcaacaactaagtacgcacatg
actctccatatttcggcaacatcggatgatttgaacgtcgactatttgcccagactgcga
tcggcagtggtgaaattgctcgtcgacaacgacgccaaaggggcagtggagcagtgccaa
gcttacgatttgactcgtgaagatgtcgaagcgatgatggaattgggaatctggccaaat
cgaccggatcccatgtccagcgtcgccagcaagtccaaagcggcatttactcgtgctttc
aattcgtcgaaccacttgttgccctattccaacgatgctgcagtggttggaaggagaaag
aaaatgttgtcagcggcattcgatggaattcaagaagaagccgaagatccgttcgacaat
ggagagaaaaatcgtatgaaaaatccaccctcagactctgaagatgaggaggatgcttct
gtggaaatgtttcgcgtgtttgacaaaagaataattttacatctgcgtggaagtgaagcg
accgtattttttgtttgttgtaactttcgtcgtgagcactcgtaa
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