Trichinella spiralis: Tsp_06855
Help
Entry
Tsp_06855 CDS
T01609
Name
(RefSeq) putative squamous cell carcinoma antigen recognized by T-cells 3
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_06855
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_06855
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
Tsp_06855
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
Tsp_06855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
RRM_1
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
RRM_occluded
RRM_5
RRM_MARF1
NRDE-2
Cdc6_C
UTP6_C
Motif
Other DBs
NCBI-GeneID:
10912048
NCBI-ProteinID:
XP_003380701
LinkDB
All DBs
Position
Unknown
AA seq
1241 aa
AA seq
DB search
MHQLTKTSARSASKRSQLRLNSNCKAQDNHNVLENHFCAIPNNTITTITNRIMNQSAEDM
EELGEELNDMDFDSHLDDELDAQLTNLRQMVIDNPTSFSVYNDLVQALKCAGELIELRET
RREMSRRFVLLPNVWLEWIGDELELETPTADILSMFEQGLKDFPASLHLWMEYLNLYCTA
SQPDEMRSRIEQAITAVGLNVAEASTIWQMYRDFEMAMTPLHQPNGSSSSPSDEKAQYLS
VFRRQLSVPHIGLREAYEEYKDLLNGAEVDKATEFAYRSALKELEMLESFEKQLESYSGP
RSSKFSAYIDFEMKQKSPARLQVLFERAILHCYTDETLWLRYLNWLNENMNLPDVTLPVY
GRAVRSCPRSMKIRQMYLLACERFKCDWSIISKVMTDALEISYSQLETVELLLTHIYQRK
RFISTEGGHFTWKCAQQKGFEDGAEILKDRFHGAWDADFWYRQSWARFAADDCKDMNAAR
LLWKEIMHEAGGTNPTLWLDYVWLERQHGDFQHVCSIYQQAANSLSEHHAALFAEWLQYV
NEKGTLDDVLSTMHRIERHQMRLKDIQSKGKLQRKKQQQTAKKRAEQQEEEVGEELLNSA
MQRDGVSVKPYVSVGEKASSKDHFKKDSLGTVEISTAVGREDAVQVDADGFLIPPVPKKT
KTAESHAKQAEVVEQSTLETTNDKSTKHANTVFVSNLDFALSKERLKDTMAEAGEVVDVR
MIMLRPNRSKGYAYVDYKDEASVKKALKMDRRCIDGRPMYVSVCRGDVETGQQSDKPNSG
FQYSVGLEKNKLFVKNIPTFATENEVETLFRQYGDLRSVRLVLHKSGRSKGLAYVEFDNE
EAAERARLGQNGAHFLGKRLSVEFSNPPPRQDRSSSTFARKSQNPYSGGTSRPADVARSA
PRLRLVPRALSTSQKRMDKDNSMLLSLSPPASKEEEELIAPFKYICSIPGKQIRVKLGFN
LWLNVDNEIVNAISEIVEMLHNASLMIDDIEDSSELRRGMPVTHRIYGLPTTLNTANYIY
FVALSKTVQLRHRDAVKVFTESLLDLHRGQGMEIYWRDAVICPTEAKYLDMVIKKTGGLF
RLGVNMLQLFSTNKTDYNQLLNDMATYFQIRDDYMNLVAGEVRENFSLKGFAEDLTEGKF
SFPIIHALQSNPENDQILKILRQRTNSVELKKHCINILSNLGSLNYTKQRLNELSNKWYS
NVVYIWLSFGLILSDIEKFGGNTHLQDLMEMLQLLHTCQKQ
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcatcaacttaccaaaacaagcgcacgttctgcaagtaagaggtcacaactgcgttta
aatagtaattgtaaggctcaggataatcacaatgtacttgaaaatcatttttgtgcaatt
cctaacaatacaataacaacaataacaaatagaataatgaatcaaagcgctgaagatatg
gaagaacttggagaagaacttaacgatatggattttgattcccatttagatgatgaactt
gacgcgcagctcactaacttgcgtcagatggtaattgataatcctacaagtttctcagtt
tacaacgatcttgtgcaagcattgaaatgcgctggagagttaatagaactacgtgaaacg
cgtcgtgaaatgagccgtcgttttgttcttttaccaaatgtatggttagaatggattggc
gatgagttggaattggaaactccgacagcagacatattgtctatgtttgaacaggggttg
aaagattttcccgcatcattgcatctttggatggaatatttgaatctttattgcactgca
tcacaaccggatgaaatgcgcagtcgtattgaacaagcaattactgctgtgggattgaat
gtcgctgaagcgtcaacaatttggcaaatgtatcgcgattttgaaatggcaatgactcca
ctgcatcaaccgaatggtagttcttcatctccatctgatgaaaaagcacaatatttatcg
gtttttcgtcgtcaattgtctgttccccatattggactgcgtgaagcatatgaagaatat
aaagatctgttgaacggtgctgaagtagataaagcgacagagtttgcttatagaagcgct
ttaaaggaattggaaatgttggaaagttttgaaaagcaactagagtcgtacagtgggcct
cgttcttcgaaattttccgcttatatagatttcgaaatgaagcagaaatctcccgcacgt
ttacaagtcctttttgaacgtgctattcttcactgttacactgacgaaacattgtggctg
cgctatttgaactggcttaacgaaaatatgaatttacctgacgttacgttgcctgtttat
ggaagagctgtccgttcttgcccaagatcgatgaaaataaggcaaatgtatttgcttgct
tgcgagcgattcaaatgcgactggtcaattatatcaaaagtcatgacagatgcacttgaa
atttcctattcgcaattagaaactgtagaattattgttaactcacatttatcaacggaaa
agattcatctcaacagaaggtggacattttacttggaaatgtgcccagcaaaaaggattc
gaagatggtgctgaaattttgaaagatcgattccacggggcttgggatgcggatttctgg
taccggcagagttgggctcggttcgcggcggacgattgcaaggacatgaacgccgctcga
ctgctctggaaggaaataatgcacgaagccggtggcacgaatcccactttgtggctcgat
tacgtttggctggagaggcagcacggcgattttcagcacgtctgttcaatttatcagcag
gcggcaaattcactgtccgaacaccatgcggctttgtttgccgaatggctacagtacgtg
aacgaaaagggaactttggacgacgtgctgtcgacgatgcatcgcattgaacgacatcag
atgcgactgaaggatattcagagcaaggggaaattgcaacgcaagaaacaacaacagact
gcaaagaaacgagccgaacaacaagaagaagaagtaggagaagaattgttgaattcagca
atgcaacgggatggggtttcggtgaagccgtacgtcagcgttggtgaaaaagcatcatcg
aaagatcacttcaagaaagattcacttgggaccgttgaaatcagtactgcggtgggacga
gaagatgctgtgcaagtcgatgcggacggatttctcattccgccagttccgaagaagaca
aaaaccgccgaatcccatgcgaaacaagcagaagttgtcgaacagtcgacgttggaaaca
acaaacgacaaaagtacgaaacatgcgaatacggtattcgtgagcaatttggatttcgct
ttgtctaaagaacgtctgaaagatacgatggccgaagctggtgaagtggtcgacgtgcga
atgatcatgctcagaccgaaccgtagcaaaggttacgcgtatgttgattacaaagatgaa
gccagtgtgaagaaggcgctgaaaatggaccgtcgttgcattgatggacggccgatgtat
gtatcggtttgccgaggtgatgtcgaaactggtcaacagtcggataagccaaattctgga
ttccaatattcggtcggtttggaaaagaacaaactttttgtaaaaaatattcccacattt
gccaccgaaaacgaggtggaaactcttttcaggcaatatggtgatttgagaagtgtgcgt
ttggttttgcacaagagtggcagaagcaaaggcttggcgtatgttgaatttgacaacgaa
gaagccgctgaacgagcacgacttgggcaaaatggagctcactttctcggcaaacgtttg
tctgtggaattcagcaatccaccccctaggcaggatagatcgtcgtccacatttgccaga
aaatcacagaatccatatagcggtggtacgtctcgacctgcggatgtagctagaagcgca
ccacgactgcgtcttgttcccagagcactttccacttcgcagaagcgaatggacaaagac
aattcaatgctgctctccttatcaccaccggctagtaaagaagaagaggaattgatcgct
ccattcaaatacatctgcagcatacccggaaagcagatacgcgtaaaattgggtttcaat
ttatggcttaatgttgataatgaaatagtgaatgcgattagtgaaatcgtcgagatgttg
cacaacgccagtctgatgattgacgatattgaagacagttcagaactgcggcgtggtatg
cccgtcactcaccgtatttatggtcttccgactacattgaatactgccaattacatttat
ttcgttgcactatccaaaactgtccagctgcgtcacagggacgcggttaaagtatttaca
gaatctttgctcgatttgcatcgtggccaaggtatggaaatttattggcgcgatgcggtc
atttgtccaactgaggcgaaatatttggatatggttatcaaaaaaaccggcggtcttttc
cgtttgggtgtcaatatgttgcagttgttttcaacgaacaaaactgactacaatcaattg
ttgaatgatatggcaacgtattttcaaattcgagacgactatatgaatttggttgctggt
gaagtgagggaaaattttagcttgaaaggttttgccgaagatttgactgagggaaaattt
tcatttccaatcattcacgcacttcaatccaatccggaaaatgatcaaattttgaaaatt
ttacgtcaacgcacgaattcagtggaattgaaaaagcattgcatcaacatactgtccaat
ttgggttctttgaactacacgaaacagcgtttgaatgaattatcaaataagtggtactct
aatgtagtgtatatttggttgtcttttggactaattttgagtgatattgaaaaattcggt
ggtaatacccatttgcaagatttgatggaaatgttgcaactgctgcacacgtgtcaaaag
cagtag
DBGET
integrated database retrieval system
