Trichinella spiralis: Tsp_07027
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Entry
Tsp_07027 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K14962
COMPASS component SWD2
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_07027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_07027
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_07027
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Tsp_07027
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
Tsp_07027
COMPASS/SET1 complex (yeast)
Tsp_07027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
10903320
NCBI-ProteinID:
XP_003380882
LinkDB
All DBs
Position
Unknown
AA seq
356 aa
AA seq
DB search
METSDPVLEPVIQYSVCGLDRAALAGLHPQKLIVQHEFEISAMDFDYSETNMVFCDAEGL
ISYVKMRAEMYKSEDTLNSDKYGCGIIKFMNDSMHIVHSSSKVDDKIRLMNLDKSSYVRY
FQLHQAKVLSISSSPAIPHFFASSSKDRSVVFWDDRDRSPIAALEAGVHPLATLNDEFEV
LATCNQAGEVSLFDIRKCYSEGPFSRSVIKKANPNEIWTSIQFSPNKKFLLICTDGLENR
LISTKSGTEVAKLMVSQISIEFHVDQAERFGHRNSAKLKIDSSFASNSTTVISGSQDGKL
FLWDVKVSPNSTNCVQLFPMLSYPGPHDNACSRVLCGKKSFHVVTASKEAWFWGIS
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggagacgtctgatcctgttctcgagccagtaatacaatactcggtttgcggactggat
agagcagcactggctggtctgcatccgcagaagttgattgtgcagcatgagtttgaaatt
tcggccatggattttgattactctgaaacaaatatggttttctgcgatgcagaaggatta
atttcttacgtgaaaatgcgagccgaaatgtacaaaagtgaagatactttgaattctgac
aaatacggttgcggcattataaaatttatgaacgactctatgcacattgtgcattcatct
tccaaagttgatgacaaaatacgcttgatgaatttggataagtcatcttatgttcgttat
ttccagttgcatcaagcaaaagttttgtcgatttcttcatcaccggctattcctcatttt
ttcgcgtcatcgtcgaaagatcgaagcgttgtattttgggacgaccgggataggtcgcca
attgctgcattggaagctggcgtccacccgttggctacgttgaacgatgaatttgaagtt
ttggccacatgcaatcaggctggtgaagtatcactgttcgatattcgaaaatgttactcg
gagggtccatttagccgtagtgtcataaaaaaggcgaatccgaatgaaatctggacaagc
attcaattttctccaaataaaaaatttttactcatctgcaccgacggcttggagaatcgg
ttgatcagtacaaaaagtggaactgaagttgcgaaactgatggtcagtcaaattagcatt
gaatttcatgttgatcaagctgaacgttttggtcacaggaatagtgccaagttgaagatc
gattcatcgtttgcatcaaattcgactactgtaatctcggggtctcaagatgggaaattg
ttcctttgggatgtgaaggtctcgccaaattcgaccaactgtgtacagctgtttccaatg
ttgagttatcccggtccacatgacaatgcttgttcccgagtattgtgcggcaaaaaatcc
tttcacgtcgtcacggctagcaaagaagcgtggttctggggaatttcgtga
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