Trichinella spiralis: Tsp_07057
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Entry
Tsp_07057 CDS
T01609
Name
(RefSeq) putative ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_07057
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_07057
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
Tsp_07057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DBP10CT
Motif
Other DBs
NCBI-GeneID:
10903351
NCBI-ProteinID:
XP_003380913
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MGFEEQLREVLKRLPPDPTLPKSLVDFTRAGLRHPTLIRLDVDSKLSDKLKLTHLFCRRE
DKLGILLSILGDRSLIEENSLTLIFCATKHYVEFLHAVLEYFNFKCACLYSSMDSEARRV
NVEKFHRKQINILIVTDLAARGVDIPLLDNVINFHFPAKAKLFVHRVGRAARAGRHGHAI
SFISTDEYAYLLDLYLFLGRSLQFSTSGTCADVGDLIGTVPQRRVDDENRTIALLLNTTN
LDLKVAENSYKHYTRSRPTSSAESVRRAKAETRLNNLPNHPAMAAVGFGCEKLEREKDIL
LANIKCFRPQTVRSRRELFDVNLCTVFELNAKSSDLQWQVMKAKRRVHQKKIDQSKAATV
AEMNAASNEEDHPLQQHVDAHANDPVDFTGVFKRATESVLSHKKKKKKTQNQKTTVKEEE
KKEQFFIPYVPSDLHSEQGDRKRKKFVNACDEDNKKRSSKKIKTESGVWIPASYKTDLYD
SWKKKLRMKAVQAKGRKGVASGGGGRRPVKSELKSKMQIIKQHVESEHRRKRNGKQLTNE
KKQKKKKK
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgaagaacagctcagagaagtgctgaaacgactaccaccagaccctacactg
cccaaatcgttggtcgatttcacacgagctggtctccgtcatccaactttaatccgtttg
gatgtcgattcaaaactgagtgacaaactcaagttgactcatttgttctgtcgacgtgaa
gacaagttgggcattttgctttcgattctcggcgacagatcgctgatcgaagaaaattca
ctgacgttgattttctgcgctacgaagcattatgttgaatttttacacgctgtactggaa
tatttcaacttcaaatgcgcctgcttgtacagttcaatggattcagaggcaaggcgagtg
aacgttgaaaaattccaccgcaagcaaatcaacattttgattgtaaccgacttggccgcc
cggggtgtggacattccactgttggacaacgtgatcaatttccactttccggcaaaggcg
aaattgttcgtccatcgcgtcggtcgtgcggcaagggctggtcgtcatggtcacgcgatc
agcttcatcagcaccgatgaatatgcctacctgttggatttgtaccttttcttgggacgt
tcgttgcaattttccacgagcggaacttgtgccgacgttggagatctgatcggtacagta
ccgcagcggcgtgtcgacgacgagaaccgcaccattgctttgttgttgaataccaccaat
ttagatttgaaagtagccgaaaactcgtacaaacattacactcgttcccgaccgaccagc
agtgctgaaagcgtgcgtcgggctaaagctgaaactcgtctgaacaatttaccgaatcat
cctgctatggcagcagttggatttggatgtgaaaaattggaacgggaaaaggacatcctt
ttggcgaatataaagtgctttcgtccgcagacggttcgttcgcgtcgagaattattcgac
gtcaatttgtgtacagtattcgagttgaacgcgaaaagtagcgacttgcagtggcaagtg
atgaaagcgaagcgacgggttcatcagaaaaaaattgaccaaagcaaagcggcaacagtt
gcagaaatgaacgctgcgtcgaatgaagaagatcatccacttcaacaacacgttgatgct
catgcgaacgatcctgtagactttacgggagtgtttaaaagggctacagaatcggtactt
tcgcataagaagaaaaaaaagaagactcaaaatcagaaaacgaccgtgaaagaagaagaa
aaaaaggaacagtttttcattccatacgttccgtcagatttgcattccgagcaaggggat
cggaagaggaaaaagttcgtcaacgcttgtgacgaggacaacaagaaacgaagctcgaaa
aagatcaaaacggaaagtggcgtttggataccggcctcgtacaaaaccgacctttacgac
agttggaaaaagaagctgcgcatgaaagctgtccaagctaaagggagaaaaggtgtggcc
agtggtggtggtggtagaagacccgtgaaaagtgaattgaaatccaaaatgcaaataatc
aaacaacatgtggaaagtgaacaccgaaggaagagaaatggaaaacaattgaccaatgaa
aagaagcagaagaagaagaagaaataa
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