Trichinella spiralis: Tsp_07101
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Entry
Tsp_07101 CDS
T01609
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_07101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_07101
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_07101
Spliceosome [BR:
tsp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
Tsp_07101
Complex B
Tsp_07101
Complex C
U2 SnRNP specific factors
Tsp_07101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
10897993
NCBI-ProteinID:
XP_003381401
UniProt:
E5RY46
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MSNYQQSQFECAKMEYSRQIRKRRMRDYDENLEDTDEAESNFSNQHKGGSNSDDEVDPLD
AFMADVEKQAKRDKEISIENAKHSKVEKLTSSKLGRTDIEDEDEQESYFNWVEQNKDKLG
KISEVEEEDDLEYDEEGNPIYKKCKYIDPLPPIDHSKIDYEPFEKNFYIEHADIAKLTQP
QVNELREKMDLKVTGDRAPKLVTSFAHFGFDEKLMSLIRKYEFSQPTPIQAQGIPVVMSG
RDIIGIAKTGSGKTAAYLWPAIYHIISQRHLDEKEGPICLIVVPTRELAIQVYNEAKKYG
KYFDIRVVCAYGGGSKWEQSKALAEGAEVVVCTPGRIIDLIKAKATNFERVTYFVLDEAD
RMFDLGFEAQVRSIADHIRPDRQCLMFSATFKKKIERLARDVLTNPVKVIQGEVGEANAD
IQQIVEYFASPPTKWTWLLGNLVKFCSMGKVLIFISQKVHVEEIAENLKAKDFRVCILHG
DMFQHERNQVIHAFKKDDVPILIATDVAARGLDIPTIKTVINYDVAKDLDTHVHRIGRTG
RAGEKGFAYTLVTDKDKEFAGHLVKSLESVNQEVPTALLNLAMQSAWFRKTRSNSVGGKK
PSSIGGFGFGYKKGNSSDQANAQLQQSVKEASCSSDRLNSIKAAYANHYKSTFKPSASTA
VMGTNQAAFTDPIPEWKKKLQAFQVAHEQQVEEGKKLIMNEEEENFSSNAEAASSSAGGC
DNDSTGQSTDEEATKRRSRWN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattatcaacagtcgcaatttgaatgcgctaagatggaatattcgcgacaaatt
cgtaaaagaagaatgcgtgattacgatgagaacttggaagatactgatgaagcagaatct
aatttttccaatcaacataaaggaggatctaacagtgatgacgaagtggatccattagat
gcttttatggctgatgtcgagaaacaggcgaaaagagataaggaaattagtatagaaaat
gctaaacattccaaagttgaaaaattgactagcagtaaacttggtcgaactgatattgaa
gatgaagatgaacaagaatcgtactttaactgggttgaacaaaacaaagataaacttgga
aaaatctcagaagttgaagaagaggatgatttagaatatgacgaagaaggaaatcctatc
tataaaaaatgcaaatatattgaccctcttccaccgattgatcattcgaaaattgattat
gaaccatttgaaaaaaacttttatattgaacatgcagatattgcaaaattgacccaacca
caagtaaatgaattgcgtgaaaaaatggatctaaaagtcaccggcgaccgagcaccaaaa
ttggttaccagctttgctcattttggatttgatgaaaaattgatgagcctgattcgaaaa
tatgaattttcacagccaactcctatccaagcacaaggaataccagttgtaatgagtggt
cgagatataataggcattgccaagactggcagtggtaaaacggcagcttatttgtggcct
gcaatatatcatattattagtcaacgccaccttgatgagaaagaaggacctatttgttta
attgttgtgccgactagagaattggccatacaagtttataacgaagctaaaaaatatggc
aaatattttgatattcgagtagtttgcgcttacggaggaggttcaaaatgggaacaatcg
aaagcgttagccgaaggcgctgaggtggttgtttgtactcctggacgtattattgatttg
attaaagcgaaggcgacaaatttcgagcgcgttacatattttgttttagacgaagcggat
cgaatgttcgacctcggctttgaagctcaagttcgatcgattgcggaccacattcgtcca
gatcgtcagtgtttgatgttcagcgcgacttttaaaaagaaaattgaacgtctagcacgt
gatgtattgacaaatcctgtaaaagttattcagggtgaagttggagaggccaacgctgac
attcagcagatagtggaatattttgcttcacctccgacaaaatggacttggctgttggga
aatttggtaaaattttgctccatgggaaaggtgctgatattcatatcgcagaaagtgcac
gtcgaagaaattgcagaaaatttgaaagcgaaagatttccgtgtttgcattttgcatggt
gacatgtttcaacacgaacgcaaccaagtcattcatgcgttcaaaaaagatgatgtacca
attttgatcgcaaccgatgttgccgctcggggtttggatattccaacaattaagacggtt
atcaattacgatgtggccaaagatctggatacgcatgtccatcgcattggacgtacggga
cgagctggagaaaaaggttttgcgtatactttggtcacggacaaggataaagaatttgct
ggacatttggtgaaaagtttggaaagtgttaatcaagaagttccgactgctttgctcaat
ttagcaatgcagagtgcatggtttcgcaaaactcgttccaattcagttggtggtaaaaag
cccagttctattgggggttttggtttcggttacaagaagggaaattcatcagatcaagct
aacgcccaattgcaacagagcgtgaaagaagcatcttgcagttcagacaggctgaattca
ataaaagctgcttatgctaatcattacaagtcgacatttaaaccatctgccagtacagca
gtgatggggacaaatcaggcagcgtttacggatccaattccagaatggaagaaaaagtta
caagctttccaagtggctcatgaacagcaagttgaagaaggaaaaaaattaataatgaac
gaagaagaagaaaatttttcctccaacgcggaagctgcttcatcttctgctggtggttgt
gataatgattcaactggccagtcgacggatgaggaggctactaaacgaagatccagatgg
aactaa
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