Trichinella spiralis: Tsp_07169
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Entry
Tsp_07169 CDS
T01609
Name
(RefSeq) putative DEAD/DEAH box helicase
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_07169
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_07169
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
90S particles
Helicases
Tsp_07169
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
CTE_SPB4
Helicase_C
PAS_11
Motif
Other DBs
NCBI-GeneID:
10898104
NCBI-ProteinID:
XP_003381461
UniProt:
E5RYB8
LinkDB
All DBs
Position
Unknown
AA seq
798 aa
AA seq
DB search
MAVPMILQSIHPPQFGRNLKEKTEQEKDGGVDFPFDLQYNKIQTELSHFDDMFNHKVEKK
VNRSTRKCKTAKKQEEEEEIKKVQEEYDKVDSCNLQKFSDFPLSRRTKHGLQNSGYHYPT
EIQREAILFSLRGMDILGAAKTGSGKTLAFVVPVLECLWRQRWSSVDGLGALIISPTREL
ALQTYETFCKVGCMHDFSAALVIGGTDADYEKRRIGQSNLVVCTPGRLLQHMDENPLFDT
TQLQIIVLDEADRILDLGFSAQLNAIIENLPETRQTLLYSATQTKSVKDLARLSLKNPVY
VSVHENSKFCTPERLKQNFVVCKEEDKLNYFWSFLRTHTKCKVLAFFTNCKQVGELYYRC
VRFVYEAFRRLQPGLTVLHLHGSMSLQKRVNRFGGISDFPCVDWVVQVDCPADLAEYIHR
SGRTARYNNKGRALLIVNPAQTIFIEHLKEKRIPISEIQINYEKFLNIQTKLQTFCSQDP
DFHSICSRALVAYCKSLHFAKNKEIFNMEKIDLEALAKSMGLFSVPRMRFLRNVNKKVHL
VDDSLSEEKQPSDEMVHVPDNQNDTKQLDSDEDSDFLKVKQHDVFNVLGQEDNFNVPNFE
MSNDISKKKLVITRASKVKKMNKKNIQLNQKIIFTEDDDNCNDELKEVQRSEEAGSSESY
IELAKKRLKEADEIDKKVHRERSRMIKRERLLKKKLKKAEKRHRQLPLSHFEEENGESGS
ASEAEQEPDLSWLPDPDKVYKYSEEEVVVPDAQLKRKTQKNLKEKEIESKKKKMSNSKCM
GELTLEDQEAFALSLLEM
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcccatgatcctccaatcaatacatccgcctcaattcggcagaaatctaaag
gagaaaaccgaacaggaaaaagatggtggtgtagattttccgtttgatttacagtataac
aaaatacagacggaactctcacattttgatgatatgtttaaccataaggtagagaaaaaa
gtaaatagatcaacaaggaaatgtaaaactgcaaagaaacaagaagaagaagaagaaata
aagaaagtgcaagaagaatatgataaagttgattcttgcaacttacagaaattttcagac
tttccattatcacgaagaacgaaacatggattgcagaattccggttatcactatcctaca
gaaattcaacgagaagctattcttttttctttgagaggaatggatattttgggtgcagcc
aaaacgggaagcggaaaaacgttggcttttgtagtaccggttttggaatgtctttggcgt
cagcgatggtcatctgtcgatggactcggagctttgattatttcacctactcgagaattg
gctttgcagacatatgaaacgttttgcaaagtgggatgcatgcatgatttttccgcagct
ttagtgattggaggaacagatgcagattatgagaaaaggagaattggtcaaagcaatctt
gtggtttgtacaccgggacgactgttgcaacacatggatgagaatcctttatttgacaca
acacaactccagattatagtgttggatgaagccgacagaatattagatttaggcttttct
gcgcagcttaacgcgatcatagaaaatttgccagaaactcggcaaactttactgtattcg
gctacgcaaacaaaatcagtgaaagatttggctcgactatctttgaaaaatccagtatac
gtatctgtacatgaaaattcaaagttctgtactcccgagcgattgaagcagaatttcgtt
gtctgtaaagaagaagataagctaaattatttctggtcatttcttcgaacccataccaag
tgtaaagttcttgctttttttacaaattgcaaacaagttggtgaactctattatcgatgc
gttagatttgtgtatgaagcgtttcgtcgccttcagcctggactgacggtactgcacttg
cacgggtcgatgagtttgcaaaagcgagtcaaccgttttgggggaatttcagattttcca
tgtgttgattgggttgttcaagtcgattgtcctgccgatttggcggaatatattcatcga
agtggaagaacagctcgttacaataataaaggtcgtgcacttttgattgtcaatcctgcg
cagacgatcttcattgaacatcttaaagagaaacggattccaatttctgaaatacaaatc
aattatgagaaatttttaaatattcaaacaaaattgcaaacattctgtagtcaagatcca
gattttcattctatttgttcaagggctttggttgcctactgtaaaagtttacattttgcg
aaaaacaaggaaatttttaacatggaaaaaatcgatttagaagctttggctaaatcgatg
ggattgttctctgtaccgcgtatgcgctttttgagaaacgttaacaagaaggttcatttg
gtcgatgattcgctttctgaagaaaagcaaccttccgatgaaatggtgcatgttcctgat
aatcaaaatgatacgaaacaattggattcagatgaagattcggattttctcaaagttaaa
cagcacgatgtattcaatgttttgggacaggaagacaatttcaacgtccctaattttgaa
atgtcgaatgatatttcaaagaagaaacttgtcatcactcgtgcatctaaagtgaaaaag
atgaataaaaagaatatacaattgaatcaaaaaatcatttttacagaagatgatgataat
tgcaacgatgaattgaaagaggtgcaacgttctgaagaagctggctcatctgaatcatac
attgaattggctaagaagcgtctcaaggaagcggatgaaatcgataaaaaagtgcaccga
gaacgcagtcgaatgataaaacgagagcggcttttgaagaaaaagctgaaaaaagcagaa
aagcgacatcgtcagcttccactttcacattttgaagaggaaaatggagaaagtggttcc
gcttctgaagcagagcaagaacctgacttatcttggcttcctgatccagacaaggtttat
aaatattcagaggaagaagtagttgttcctgatgcacagttgaaaaggaaaacacagaag
aatttgaaagagaaagaaattgaatcaaaaaaaaagaaaatgagcaattcaaaatgtatg
ggcgaacttactttggaagatcaagaagcatttgcattaagcttattggaaatgtaa
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