KEGG   Trichinella spiralis: Tsp_07270
Entry
Tsp_07270         CDS       T01609                                 
Name
(RefSeq) DNA polymerase family B, exonuclease domain protein
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
tsp  Trichinella spiralis
Pathway
tsp03030  DNA replication
tsp03410  Base excision repair
tsp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tsp_07270
   03410 Base excision repair
    Tsp_07270
   03420 Nucleotide excision repair
    Tsp_07270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsp03032]
    Tsp_07270
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_07270
Enzymes [BR:tsp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Tsp_07270
DNA replication proteins [BR:tsp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    Tsp_07270
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      Tsp_07270
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B_exo2 DNA_pol_B RNase_H_2 HTH_Tnp_4
Other DBs
NCBI-GeneID: 10898309
NCBI-ProteinID: XP_003381583
LinkDB
Position
Unknown
AA seq 2148 aa
MAQSFQHASEKVFENRSIRSAIDSRFGYDICDGKVEKAAWLINMHATEISNKNGRMESAM
EYYFLQADGTKFKLLYSYRPYFFVSVREGSEADFVVMVTKLFAGLVDSAEIVEKNDLDQT
NHLSGLRRLYVKLYFLNTSDLVKVRNEIMYKVEDNKKVISSQWLFSSANTDSEFSNAGFQ
ERLESVLDIREYDIPYYIRATIDLKIFVGLWYDISATNGKITKIEPIRDRINRPEPCVLA
FDIETTKAPLKFPDSSCDEIMMISYMINGQVGFLIINREVVSEDVEDFEYSPKPEFEGHF
SVFNEANEQSLLLRFFGEFQKYAPDIVVTYNGDAFDWPFVEARATACGLDMYTSLGFRRN
ASGEYKSRQSSHMDAFKWVKRDSYLPMGSHNLKACARIKLRYDPVELDPEELVPMARSKP
QAVANYSVSDAVATYYLYMIYVHPFTFALCTIIPMNPDDVCNLTVLRKGSGTLCEALLMV
QAYQSNIIFPNKKGADVKKFTADGHLVMSETYVGGHVEALECGVYKSDIACQFDVDLTTV
QKLMDDLENTLLYSLQADSVTLDQIDNFTEVCNEIKEKLQSLKDSPSRHETPLIYHLDVG
AMYPNIILTNRLQPPAIVNESVCAVCDFNRPGAKCRLPANKSEYQWIMQQLNKEKLSTAS
NSSSRHFHHLSDDEKSEFENKRLKEYCRKAYGRNHDFRTEVKKTLVCQRENSFYVDTIRA
FRDRRYEYKCLLKSAKKKLAEATAACNFEQIKDFKASCVLYDSLQLAHKSRWHSMEMAGI
VCHTGAMIIKKSRELIDKIGRPLELDTDGIWCILPSSFPEQAIFKLRDGGGKVTVSYPAA
LLNMMVSQCFTNDQYHELINQSTLSYKVRSENTIAFEVDGPYKAIVLPSSKEEGKKLKKR
YAVYNFDGSIAELKGFEIKRRGELQLIKIFQSAVFDGFLKGSSLEEVYGSVAEVANYWLD
LLYSKAVDITDAELFDLISENRSLSKKIEEYGNQKSAPIIAAKRLAEFLGDEMIKNSGLN
CRTVILKEPRGAPTSERAVPVAIFQADANIARHFLKRWLKRCDFSENFDIREIIDWDYYI
DRLGSTILKLISIPAAIQGVTNPVPRIPLPDWVRNKVAVTDNSRKQVRLNDLFRPMQDIE
ELWTTEDEEAGKALAAKKALQASKGGKKNVKSVTDEILGESTSAQKKNYVLSWLYGLKKR
WMHMHRQSRKRPHEMIESDVITSQATGPTHRVDQMLLASPRNLLTRPWNIIQILKNKEPG
LFTLWVSIGSELHNVRLRAPRIFYVNQRIPKQIDSTDVYRKCIRTLPRSHPVYHLYEYEV
PEEKYERHLHQLNTEINAFHIEGIYETRVPLFFRVLMQLGCVCQAKPALRDLLKVPEEFK
LNQLDSALDDDVRYLSEDVFKTIFLYNYAQDTRSVWCLCMPNTKIGLVWIVEKSGIANHP
NVSALYSQERKAKLEVNSKRMFPEEDYTFKVTMETNVRQVYRSMQRALRSYHDGKHGPTM
VAYISSHECDQLMSLISSLSYFPVVKLRIVDGCLDWQRVGCKKVVTHFLNVNSYLTTFKD
LCRYMRIPLGNVPTNPTQYGSDLSYARHLCKSGHVLWCSNSDVPDFGGKETDDHRLNVDS
DDAVDSQINRAGFYKNITFELNIVSLPIAAVLSTSRILDFDNSEAFFKASSTTKKTGVAT
LHSLNSYNNDESILLSSAFKVMKQMVHGWLKEVTLFQNVFADNHMIHFYRWLGSTDSLLF
DPCLKRAVDSLMKKLYLMLIAELDQMGLQIVHADLNRVILSSGRPKYDDAVAHVDYILRT
IQNKEIFSVVDLLKSKIWNLLLWLDEKKMKNILQNNYGGVEQCTTQGARTDPMRADTTTT
DNIGLTMNWQLLHFLPSAFNCQESFKMIIAGYIMLIYNFLIDSDLQSNSADLDNNDEQMM
MTTTQPTISQGLMQQKASMKLNYERLKQFSLELLNGELSEKLFNTVRKVQRAAKLHPDTV
ASTFPRFVGSHLHLTNPALELAKTLCKVLSLDEMIADEIYPIKRDLLAILNVGEFAEIAE
WKNPSLSMILRDFPCKQCNLCRDLDLCRDFELNSNDSETEIWRCSRCKTVYDIGDIEFRL
LQYLNNFCKSYFTQDLKCEKCQEPISNGKPPNCTQLDLLKLTTPKFVD
NT seq 6447 nt   +upstreamnt  +downstreamnt
atggcgcagagttttcaacatgcaagtgaaaaagtttttgaaaatcgaagtattagatca
gctatagacagtcgcttcgggtatgacatttgcgatgggaaagtcgagaaagctgcttgg
ctcataaatatgcatgcgacagaaatttcgaacaagaatggccgtatggaaagcgcaatg
gaatattactttttgcaagctgatggtaccaaattcaagctactttattcatacagacca
tacttttttgtttctgtaagagaaggatccgaagcggattttgttgttatggtgacgaaa
ctttttgctggattggtagattcagctgaaattgttgagaaaaatgacttggatcagacg
aaccatctatccggcctacgtcgattgtatgtgaagttatactttttgaacaccagtgat
cttgtgaaagttcgcaacgaaatcatgtacaaagtggaggacaataaaaaagtcatttcg
tctcaatggctgtttagttctgcaaatacggattctgaattttccaatgctgggtttcaa
gaacgtttagaaagtgtcttggatatccgtgaatacgacattccttattacattcgcgca
acgattgatttaaaaatttttgttggtctttggtatgatataagtgcgacgaatggaaaa
attacaaaaatcgaacccatacgagatcggatcaacagaccagaaccgtgtgttcttgca
tttgacattgaaacaaccaaagcacctttaaagtttcctgattcttcttgtgatgaaata
atgatgatttcatacatgatcaacggacaagtcggttttttaattattaacagagaagtt
gtttcagaagatgtggaagattttgaatactctccgaaaccggaatttgaaggtcatttt
tcagtgttcaatgaagctaatgaacaatcgttgttacttcgattttttggtgaatttcaa
aaatatgctccggacattgttgtcacttataacggtgatgcttttgactggccatttgtt
gaagcccgtgctacagcttgtggcttggatatgtacacctctttaggatttcgtcgaaat
gcttctggcgaatacaaatcgcgccagagttctcatatggatgcttttaaatgggtgaag
cgagatagttatttaccgatgggcagtcacaatttgaaagcttgcgctcggataaagctg
cgctatgatccggttgagttagatcctgaagaattggtaccgatggcgaggagcaagcct
caggctgtggctaattactctgtatccgatgctgttgctacttattatttatacatgatt
tacgttcatccgtttacattcgccctgtgcacaattattcccatgaatcctgatgatgta
tgcaatttgacagtacttagaaaaggttctggaaccttatgcgaagcgttattgatggtg
caagcgtatcagtcgaacattatatttccaaataaaaagggtgcggatgtgaagaaattc
accgcagacggtcatttggtgatgtctgaaacttacgttggcgggcatgtcgaagctttg
gaatgtggagtctacaagtcggatattgcgtgtcagtttgacgtcgacttgactacagtg
cagaaattgatggatgatttggaaaatacgttattgtacagcttgcaagcggacagcgtg
acgttagatcagattgataattttaccgaagtatgcaacgaaatcaaagagaaattgcaa
tcattgaaagattcaccgagtcgtcatgagacaccgctaatttaccatcttgacgtggga
gctatgtatccgaacattattttgaccaatcgacttcaaccccctgcaattgttaacgaa
tccgtttgcgctgtatgtgatttcaatcgaccaggcgcgaaatgtcgtctgccggccaac
aagagcgaatatcagtggatcatgcaacagttgaacaaagaaaaattgtccactgcttcg
aacagttcgtccagacattttcatcatctgtctgacgatgagaagagtgaattcgaaaac
aaacgtttgaaggaatactgtaggaaagcttatggtaggaatcacgattttcgcaccgaa
gtgaaaaagacacttgtttgtcagagggaaaattccttttacgttgatacaattcgagct
ttccgtgatcgccgttatgaatacaagtgtttattaaaatctgcaaagaagaaattggct
gaagcgacggcggcttgcaattttgaacaaatcaaagatttcaaagctagttgcgtattg
tacgacagtttacaattggctcacaaatctcgttggcacagcatggaaatggctggcatt
gtttgtcacactggagctatgattattaaaaaatctcgcgaattgatcgataaaatagga
cggcctttggaattggatactgatggcatctggtgcattttgccatcgtcatttccagaa
caagcaatatttaaacttcgtgacggcggtggaaaagtgacggtatcatatccggcggca
ctattgaacatgatggttagccaatgttttactaatgatcaataccacgaattgatcaac
cagtcgacattgtcttacaaagttagatcagagaatacgatagcttttgaagtcgatggg
ccgtacaaagcgatcgtattgccttcttctaaagaagaagggaaaaaattgaaaaagaga
tatgcggtttacaattttgacggcagtattgctgaattgaaaggttttgaaattaaacgt
cgtggagagctgcagttgataaaaattttccaatcggctgtctttgatggcttcttgaaa
ggaagctctttggaagaggtttacggtagcgtggctgaagtggccaactactggctagat
ttgctttactcaaaggcagtcgatattactgatgcagaattgttcgatttgatttctgaa
aatcgcagtttgtccaaaaagatcgaagaatacggaaatcagaaatcggcgccaattata
gctgctaaacgacttgccgagtttcttggtgatgaaatgataaaaaattctggtctcaat
tgtcgtactgtgattttgaaggaacctcgaggggcaccgacttcagaaagggctgttcct
gtagcaattttccaagcagatgccaacatagctagacactttttgaaacgttggttgaag
cgatgtgatttttctgaaaatttcgacattagagagatcattgattgggattattatatt
gatcgtttgggcagtactatactgaaactgatatcaattcctgctgcaatacaaggagtt
actaatccagtaccgagaatccctttacccgactgggtacgtaataaagttgcggtgacg
gataattctaggaaacaagttcgattgaatgatttatttcgacctatgcaagacatcgag
gaactttggacaactgaggatgaagaagcagggaaagcattagcggctaagaaagcactt
caagcatccaaaggtggtaagaagaatgtgaaatcagttaccgatgaaattctaggcgaa
tcaacgtctgcacaaaagaagaattacgtactttcttggttgtatggtttgaaaaaaaga
tggatgcatatgcatcgtcagagcaggaaaaggcctcatgagatgatcgaatctgacgtg
atcacttctcaagccaccggacctactcatcgggttgatcaaatgcttctagcgagtcca
agaaaccttcttactcgtccttggaacattattcaaattttgaaaaacaaagagcctggc
ttgtttacactttgggtttcgattggttctgaattgcacaatgttcgacttcgagcacca
agaattttttacgtcaatcagcgtattccaaagcagattgattctaccgatgtttatcga
aagtgtattcgcacacttccacgttctcacccagtttatcatttgtatgaatatgaagtt
cctgaagaaaaatatgaacggcatttacatcaattgaatacggaaataaatgcgtttcat
attgaaggcatttatgaaacgcgagtgccgttgtttttcagagtgcttatgcagcttggt
tgtgtttgtcaagcgaaaccagcgttgcgcgatttactgaaagttcctgaagagttcaaa
ttaaatcaacttgattccgctttggatgacgatgtcagatacctgtccgaagatgtgttc
aaaacaatcttcttgtacaattatgctcaagatactagatcggtgtggtgtctgtgcatg
ccgaatacaaaaattggattggtatggattgtggaaaaaagtggtattgccaatcatccc
aacgtttctgcactatacagtcaagaacgcaaggcgaagttagaagttaatagcaaacga
atgtttcccgaagaagattacacttttaaagtgacaatggaaacgaatgttcgtcaggtt
tatcgttctatgcaacgagctctacgatcgtatcacgatggaaagcatggtcctacaatg
gtagcctacatatcttcccacgaatgtgatcaattgatgagcttaatttcgtcgttgtca
tattttccggtggtgaaattgcgaatagttgacggctgcttggattggcagcgtgtcggt
tgtaaaaaagtggttactcattttttgaatgttaattcctatttgacgacattcaaagat
ttgtgtcgttacatgcgcatccctttgggaaacgtgccgaccaatccgacacagtacggc
tcagatttgagctatgccaggcatttgtgcaaaagtggtcacgtgctttggtgttcaaat
tcggatgttccagattttggcggcaaagaaaccgacgatcaccgattgaacgtcgattca
gatgatgcagttgattcacagatcaaccgagcgggtttttataaaaatatcactttcgaa
ttgaacatcgtcagcttgccaattgctgccgttttatcgacaagtcgtattttggatttt
gataattcagaagcttttttcaaagcttcttcaacgacgaaaaaaacgggcgttgccacg
ttgcacagtctgaattcgtacaataatgacgagagcattttgctttcaagcgcttttaaa
gtaatgaaacaaatggtacacggttggctgaaggaagtgaccctttttcaaaatgtattt
gccgataatcatatgattcatttttaccgatggttgggatcgacggattcgttgctgttc
gatccgtgcttgaaacgagctgtagacagtctaatgaaaaagctctacttaatgctgatt
gccgagttggatcagatgggtttgcaaattgtgcacgcagatttgaatcgggtgattttg
tcaagcggtcgtccaaaatacgacgatgcggttgctcatgtcgattatattctgcgaacg
attcagaataaggaaattttttctgtcgtcgatttgttgaaaagcaaaatatggaatctt
ttgctttggttggatgagaagaagatgaaaaatattctgcagaacaattacggcggagtg
gaacaatgcaccacgcaaggggctcgcactgatccaatgcgtgccgacaccaccactact
gataatattggtttaacgatgaattggcaattgttacactttttacccagtgcattcaat
tgtcaagaaagtttcaaaatgatcattgccggttatataatgttgatttataattttctt
atcgattctgatttgcaatcaaattctgctgatttggacaacaatgacgaacaaatgatg
atgacaacgacgcagccgaccatttctcaaggtttgatgcagcagaaggcgagcatgaaa
ttgaattatgaacgtttgaaacagttttcactcgaactactcaacggggaactttctgaa
aagttgttcaacactgttcgcaaagttcaacgcgcggcaaagctgcatcccgacaccgtt
gcctccacgtttccacgtttcgtcggctcccatttgcatctgaccaatccggctttggag
ttggccaaaacgctctgcaaagtgctcagcttggatgaaatgattgccgacgaaatatac
ccaatcaaacgggacctgttggcaattttgaacgtgggagaatttgctgaaattgccgaa
tggaaaaatccatccctttcaatgattttacgcgattttccatgtaagcagtgcaatttg
tgtcgcgatttggatttgtgtcgagattttgaattgaactccaacgattcagaaactgaa
atttggcgatgcagccggtgcaagaccgtttacgatattggcgacattgagtttcgactt
ttgcaatatttgaacaatttttgcaaatcttacttcactcaagatctgaaatgcgaaaaa
tgtcaagagccgatttcaaatggaaagcctccgaactgcactcagttggatttgttgaaa
ctgacaacacccaagtttgttgattag

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