Trichinella spiralis: Tsp_07315
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Entry
Tsp_07315 CDS
T01609
Name
(RefSeq) Pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_07315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_07315
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Tsp_07315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
SOG2
HIND
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
10898439
NCBI-ProteinID:
XP_003381632
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MANRTVKDAASLKGTNPQYLIEKVTRSRIYDSRYWKEECFALSAELLVDRGMELRFVGGV
YGGNIKPTPFLCLLLKMLQIQPEKDIVIEFIRQEDSKYIRALGALYLRMTFSYVEVYKYL
EPLLNDYRKLRWINKQGKFELIHMDEFVDKLLREERFCDVQLPRLQKRAFLEETNQLPQR
VSIIEEELESFSSESEEEIQEKVKARSSRHERRRSHERRRSRSTSRHRKHRRSESAERKP
RKDRSRERHRDRRRRSSSREDRGSNRDSKKKSNKDTSKSKKSSKAVTKESSAEREIRESN
ELRAKLGLDPLKLYGGRFKFTKRMIFLQCSFISLGCWNSSYCCPVVISDHCSEVVFNDHC
SQVEFSDYCSQVVFRDHCFGDRFIKIDFQVFSCRICGWTINCLGFARVPVSESRCLLSWI
VEGCTVESDEVTKSGRIFYKPWSEINENRELNVREIVSTSFGVGIYKMLMFKPDDLVQKK
PDMDFNPIHMKLYSGIICYPFCHAVWNEQCAIERVACRVGVGPGLFVVENSVAVLSKMEP
SVVAALVACSGREQCNQAEHKQVAHLRRSDRNALPIRLVEKVLTDVQAAFKHIDAFYRTE
AVEAVKAIVHLTDRCMATVFLMARKYSGQSIENRQSAQKYICTMAIWQ
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcgaactgttaaggatgctgcttcattaaaaggaacaaatccgcagtatctt
attgaaaaagtaactcgatcccgcatttatgattctcgttactggaaggaagagtgcttt
gcattgtctgctgaactgctggttgacagaggaatggaattgcgatttgttggtggtgtt
tatggtggaaacataaaaccaactccatttctttgtcttttactgaaaatgctccaaatt
caaccagagaaggacatagttattgaatttattcgacaagaagattcgaaatacattaga
gcacttggtgcgttgtatttacgaatgactttctcatatgttgaagtatacaaatatttg
gagcctttgctaaatgactaccgtaagctaaggtggatcaacaaacaaggaaaatttgaa
ttgattcacatggacgaatttgtggacaaactgcttcgtgaggaaagattttgtgatgtt
cagcttccaagacttcagaaacgagcttttttggaagaaacgaatcagcttccgcaacgt
gtaagcataatagaagaagaactggagagtttcagttcggaaagcgaagaagaaattcaa
gaaaaagtgaaggcaagaagcagtcgacatgagagaagaagaagccatgaacgacgtcgt
tcacgatctacctcacgtcatagaaagcaccgtcgtagtgaaagtgcggaaagaaagcca
aggaaggaccggagcagggaacgtcatcgtgaccgtagacggcgatcctcgtctagagag
gatcgcggaagcaacagagattctaagaagaaaagcaacaaagatacatcaaaatcgaag
aaaagttcgaaagctgtcacaaaagaatcgtctgctgaaagagaaattcgcgaaagcaac
gaattgcgtgccaaattgggtctggatcctttgaaactatatggagggagatttaaattt
acgaagcggatgatatttttacaatgtagcttcatcagtttgggttgttggaacagcagt
tactgttgtccagttgtaatcagcgaccactgtagtgaagttgtattcaacgaccactgt
agtcaagttgagttcagcgactactgtagtcaagttgtattcagggatcattgtttcggt
gaccgtttcattaagatcgattttcaagttttcagctgtagaatttgtggctggacaatc
aattgccttggctttgcacgtgtaccagtgagtgaaagccggtgtcttttgtcctggatt
gtagaaggctgcacagtcgaatccgatgaagtgaccaaaagtggtcggattttttacaag
ccatggtctgaaataaatgaaaatcgtgaactaaatgttagagaaattgtttccacctct
ttcggtgtgggtatttacaaaatgctaatgttcaagccggatgatttggtccagaagaag
ccagacatggatttcaatcccatccacatgaaattgtacagtggaataatatgctaccca
ttctgtcatgctgtttggaatgaacagtgtgccattgaaagagtggcatgtagagttggc
gtcggcccaggattgtttgtggtagaaaattcggtagcagttctttccaaaatggaacca
tccgtcgtcgcagcattggtcgcatgcagcggacgtgaacagtgcaatcaagctgaacac
aagcaagtggctcatctccgacgatcagatagaaatgcgctgccgattcggttggtggaa
aaagtattaactgatgttcaagccgctttcaagcacattgatgctttttatcggacagaa
gcggttgaggctgtaaaggcgattgtccatctgaccgatcgttgtatggcaacggttttt
ctcatggcaagaaaatacagcggtcagtccattgagaacagacaatctgctcagaaatac
atttgtacgatggcaatttggcaataa
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