Trichinella spiralis: Tsp_07461
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Entry
Tsp_07461 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_07461
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_07461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_07461
03041 Spliceosome [BR:
tsp03041
]
Tsp_07461
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
Tsp_07461
Spliceosome [BR:
tsp03041
]
Complex C
Other components
EJC/TREX
Tsp_07461
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Tsp_07461
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
Motif
Other DBs
NCBI-GeneID:
10898662
NCBI-ProteinID:
XP_003381772
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MCSSAVHHTHLHNRTLGQARKAEVESFTRDHFVVASEFGHFVTNQLKRGTSLDLLVLGEI
VKNMSGVETARNLTKDQIETYAGGDILKSEVGHLSQMRNMRRSVHRLKDSLLQDDLAVTL
CILIAQQRKVIVFKDGAKVHLKLAGQMLDQCHETFIQFAHFLMANVEIEEYTRRMPLADE
LMQLYNLDCSSAMFLTRPAYNYKIREKFQELIKAEKAGQQLEDSKKIQYYISACEEIYLP
LQSKMKQLSEPEMRPELTSKFFVTFWTLSLYDLFVPTKAYQTAIDGIRKSIEQLENCREL
TESKRRKEKERFLQQESKLLQEQQTHLEHVSLVKARLMSESSRWFSSRSPRTALVSQMVQ
ACLFPRCVFHEADAFYCVKFIEMCHLFKTPNFPTLIFWDLSSAVACLSEYEASCYGRFIC
EMLELLMSWHSDREKFNQASKPFSNECANHPGFVTRTKAVAGSNNDHSRDFVDYESFRHV
LNKWHYKITRAVLICLTSDSFILIRNILLILMKILPYFPLLHNLMLTIEKRVIDVRDREK
DKRQDLHVLAASYWGHLKLRKDHMFAEEDFHAVNVKERATDCLELFEVSAIIDDEEFFLK
VNDSSSSANREVKVEDNNSATPLPNEAKKPVSSKSSSIKNSGQDTTSAVSKSSNSSSVKS
VATKTDTDKVSEDAGMSTLKNSSADTELPPETMQQQSLQPGPAKVPRLEVAESGGPVEPA
PLPKHRSSNVAKAAVGASGASTKESTTVRGVHPHHHQPQQQQQATTNRLKHKDAVVEQQQ
SSSCSTSVGTSATTRTTTTTTTTTTTTSGGRQGSTRKTSLRAPDVSSGASSTAAETSASS
LLNDSSNLGSNCITPAEKSNRNDNITSVDSSATKIDGEQQRQQNNAASTFEDTKSKTDRH
SSSAATAGHSKNSNIPPLTLESSGRKVTASSSSSTAVAKSSYHQDDRRNGNKEPEHGSAA
HKSRRKGGSVNESGMPDVLFSTLKRSPDLKRSSPSSSSSRRKKNPQRYKEKERTDTYVEF
DSAMIDSKKEARKERFAEPVDWRNKDYRYMSSAPVSRMSSFHAGNEPKTMKMVRLSQATS
RSVSPHQAGEDDDRAVLQLFFVVGLFIILDWHSAFVPIHFHHSNLTQQHHIHNMHIGGDG
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtgctcttcagctgtacaccacacgcatttgcataatcgaacacttggccaggcccga
aaagcagaagttgaaagtttcacacgcgaccatttcgtcgtggcttcagagtttggccac
tttgtcactaatcagttgaagcgtggtacaagcttggatttgcttgtacttggcgaaatt
gtgaaaaatatgagcggcgtcgagacggcgcgaaatttgaccaaagatcagattgaaacc
tacgccggcggtgatatcttaaaatccgaagttggccatttgagtcagatgcgcaacatg
aggcgttctgttcatcgcctgaaagattcattacttcaagacgatctggccgttactctt
tgtattctcatagctcagcagcgcaaagtgatcgtttttaaagatggcgcgaaagttcat
ttaaaattagcaggacaaatgcttgatcaatgccacgaaacgtttattcaatttgctcac
tttttgatggctaatgttgaaattgaagagtacacgagacgtatgccattggcagacgaa
ctgatgcaattgtacaatttggattgttcatcggcgatgttcctcactcgacctgcttac
aattacaagattcgagaaaaattccaagagctgatcaaagcggagaaggcaggacagcag
ttggaagattcgaaaaaaatacaatattacatatctgcatgcgaagaaatatatttgcct
cttcaaagtaagatgaagcaactttcagagccggaaatgcgaccagagttgacatcaaaa
ttttttgtcacattttggactttgagcttgtacgatttatttgtgccgaccaaagcctat
cagactgcaatagatggtattcgcaaatctatagaacaattggaaaattgcagagagttg
acggagtcgaaacggcgtaaagagaaggaaagatttttgcaacaggaaagcaaattgctc
caagagcagcagactcacttggagcacgtctcgttggttaaggctcgactaatgtccgaa
agttctcgctggtttagttcaagatctccaagaaccgctctggtgtcgcagatggttcaa
gcatgccttttcccaaggtgtgtctttcacgaagccgacgcgttttattgtgtcaaattt
atcgaaatgtgccatttattcaaaacaccgaattttccaactttgattttttgggatctt
tcaagtgcggtcgcctgtttgtcagaatatgaagcaagttgctatggcaggttcatatgt
gagatgcttgaattgttgatgtcttggcattcggatcgtgagaaatttaatcaggcaagc
aagccattctccaatgaatgtgccaatcatcctggattcgtcacacgtactaaagctgtt
gccgggtcgaataatgaccatagccgtgattttgttgattatgaaagttttcgacatgtt
ttgaacaaatggcactacaaaattaccagagctgttttaatatgtttaacatcagattca
tttatcctgattcgaaacattttattaatattaatgaaaatcttaccgtattttccgctt
ttgcacaatttaatgctgacaattgaaaagcgtgtgattgacgttcgagatcgagaaaag
gataaaagacaagatttgcacgttttagctgcgagctattggggtcatttgaaattgcga
aaagatcatatgtttgccgaagaggactttcacgcggtgaatgtcaaagagcgagctact
gattgtttggaattgtttgaagtgagtgcaataattgatgatgaagaattctttttgaaa
gtgaacgacagttcatcgtctgcaaatcgtgaagtaaaagtggaagataataattctgcc
actccgcttccgaatgaagcgaaaaaacccgttagctcgaagagtagtagcattaagaat
tctgggcaagatactacttctgcagtatcgaagagttcaaattcatcatcggtaaagtcg
gtcgcaacgaagacggatacggataaagtttccgaggatgctggcatgtcgacgttgaaa
aattcctctgcggatacggaactaccgccggaaacgatgcaacaacaatcgttgcagcca
ggtcccgccaaggtgccacgtcttgaagtcgccgagagcggcggtccagttgagccagct
ccgttgcctaagcatcgttcctcgaatgttgccaaagcggctgtcggtgcgtccggcgcc
tcgaccaaagaatcgaccacggtccggggtgtacatcctcatcatcatcaaccgcaacag
cagcagcaagcaacgacgaatcggttgaaacataaagatgccgttgttgagcaacagcag
agcagcagctgttccacctccgttggcacttcggcgacaacgcgaaccaccaccaccacc
accactaccaccaccaccactagtggtggccgtcaggggtcgacgagaaaaacctcattg
cgtgcaccggatgtgagcagcggcgcttcgtcaactgccgctgaaacgagcgcctcgtca
ttgttgaatgattcatcgaacctcggttcgaattgcataacgccggcagagaaatccaac
cgcaacgacaacatcacctcggtcgacagttcggctacgaaaattgacggagagcaacag
cggcagcagaataatgccgcttcaacgttcgaggacacgaaaagcaaaaccgaccgtcac
tcgtcgtccgcggccaccgctggtcattcgaaaaacagcaacatcccgccgttgacgttg
gaaagcagtggcagaaaagtgacggcgagttcgtcgtcatcgaccgcagtggcaaagtcc
tcctaccaccaagatgaccgtcgcaacggaaacaaagagcctgaacacggtagcgcagcg
cacaaatccaggcgaaagggcggttccgtcaacgagtcgggtatgccggatgttttgttt
tcgacattgaaaagatcgccagatttgaaacgctcatcgccttcttcttcttcttctcgt
cgtaaaaagaatccccagcggtacaaggaaaaagaacgaacagacacgtatgttgaattt
gacagcgccatgattgattcaaaaaaagaggcaaggaaggaacgctttgccgaacccgtc
gactggcgtaacaaagattaccgctatatgtcgtcggcacccgtttctaggatgtcatca
tttcacgctggaaatgagccgaagacgatgaaaatggttcgtctgtcgcaggctacgtca
cggtcagtttcgcctcatcaagccggcgaagatgatgatcgagcagttttgcaactgttt
tttgttgttggtctatttatcattttagattggcattccgcttttgttccaatacatttt
caccattcaaatctcacacaacagcaccatatacataatatgcatattggtggtgatgga
tga
DBGET
integrated database retrieval system
