Trichinella spiralis: Tsp_07543
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Entry
Tsp_07543 CDS
T01609
Name
(RefSeq) ATP-dependent RNA helicase Dbp2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_07543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_07543
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_07543
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_07543
Spliceosome [BR:
tsp03041
]
Complex A
U1 snRNP components
U1 related factors
Tsp_07543
Complex B
Tsp_07543
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
Tsp_07543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
10902002
NCBI-ProteinID:
XP_003381848
LinkDB
All DBs
Position
Unknown
AA seq
540 aa
AA seq
DB search
MHFSYKLKRMSNYRSGGYSRDHGRSGPSFRGQRNSNYNSSAGETLRKPRWDQIKLPVFEK
NFYKESSILMARPVSEDENFFQTHDVNVRGNRTPRPVLTFEEVGFTDSLTKQLNSNFAKP
SVIQATSWPIALSGRDMVGIAQTGSGKTLSFLLPSIVHIKHQPRVERGEGPIVLVLAPTR
ELAQQVQEVAIEYGSRNGVRSVCVYGGASKGPQQRELERGVEVCIATPGRLLDFLRMGVT
NLRRCTFLVLDEADRMLDMGFEPQIRQIVDQTRPDRQTIMFSATWPTEVRALAESFLRDY
VFVNIGSLQLAANHNIEQVVEIVSEFEKHERLLKLLQEVTKDSDPKVLIFVETKRKADEL
TRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSPIVIATDVAARGLDVDDIKFVVNYD
YPQCSEDYVHRIGRTGRCNRTGTAYTFFNANNARYAKDLIDVLIEAKQHVNPKLYELGVM
EIIVGEAVTTTIVSVHRIIIVTVVSVNALASTITVPTVAATLVALIVRATFGTDQRCWCR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcagttataaattgaagagaatgtcaaattatcgatctggtggttattcaaga
gatcacggtcgctctggtcctagctttagaggtcagcgcaacagtaattataacagtagt
gccggcgaaacgcttcgcaagcctcgatgggatcagattaagcttcctgtttttgaaaag
aatttttacaaggagtcgtctattttgatggcgagaccagtttctgaagatgagaatttt
ttccaaactcacgacgtgaatgttcgtggcaacagaactccgcgtcctgtgctaacgttt
gaagaagttggtttcacagattctttgacaaagcagttgaacagtaactttgctaagcca
agcgtaattcaagcaactagttggccgattgcactttccggtagagatatggttggtatt
gctcagaccggctcgggaaaaactctttcatttcttcttccaagcattgtgcatattaaa
catcagccacgtgttgaacgtggtgaaggtccgattgtattggttttggctccaaccaga
gaattagctcagcaggtgcaagaagttgcaatcgaatacggcagtcgtaacggtgtccgc
agtgtttgtgtatacggcggtgcttcgaaaggaccacaacagagagagctggaaagaggg
gtagaagtgtgtattgcaacacccggacgtttgctcgactttttacgcatgggtgtaaca
aatctgagaagatgtacatttttggtgttggatgaggctgatcgtatgctggatatggga
tttgaacctcagatacgtcagattgttgatcagaccaggccggatcgtcagacaattatg
ttcagcgccacgtggccaaccgaagtgcgtgctctggcagagagttttctgcgtgattat
gtttttgtgaacatcggttctttgcaattggcagcaaatcataatattgaacaagtggtt
gaaattgtttccgaatttgagaaacacgaacgattattgaaattactgcaagaagttaca
aaagacagcgatccgaaagtgttgattttcgttgaaacgaaacgaaaagctgatgaattg
actcgttggcttcgtcagaaaggttggccagtgttgtccattcatggtgacaaagcacaa
ggagaaagagattgggttttgaatgaatttcgaacaggaaaatctccaatagtcattgca
actgatgtcgctgctcggggtcttgacgttgatgatataaagtttgttgtcaactatgat
tatcctcagtgctctgaggattatgtgcatcgtataggtcgtactgggcgttgtaatcgt
accggtacggcttacactttcttcaatgccaacaacgcccgatatgcgaaagatctgatt
gatgttctgatcgaagctaaacagcatgtcaatccaaaattgtacgaattgggcgttatg
gaaataatcgttggagaagcagtaacgacgacaatcgtaagcgttcacaggataataatc
gtgacggtggtttcggtaaacgctctcgcttcgacaatcactgtaccaacggtagcagca
actctcgtggctctaatcgtccgagccacctttggaactgatcaacgctgttggtgtaga
taa
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