Trichinella spiralis: Tsp_07550
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Entry
Tsp_07550 CDS
T01609
Name
(RefSeq) putative histone-binding protein Caf1
KO
K10752
histone-binding protein RBBP4
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
tsp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_07550
03083 Polycomb repressive complex
Tsp_07550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_07550
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
Tsp_07550
Histone modification proteins
HAT complexes
HATB complex
Tsp_07550
HDAC complexes
Sin3A-HDAC complex
Tsp_07550
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
Tsp_07550
PRC2.2
Tsp_07550
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
Tsp_07550
Heterochromatin formation proteins
Other heterochromatin formation proteins
Tsp_07550
Chromatin remodeling factors
NuRD complex
Tsp_07550
NuRF complex
Tsp_07550
NuRF complex (fruit fly)
Tsp_07550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
CAF1C_H4-bd
WDR55
WD40_MABP1-WDR62_2nd
MIOS_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
eIF2A
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SPT8
WD_LRWD1
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
10902112
NCBI-ProteinID:
XP_003381877
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MRNCKLVIASTLLTLPAFLILKMNENDQESIEIGPDSSVDNFSDDQTVSSDEFKINEEDY
LTWRKNALLLYNKFICHELPDPSICVQWLPEMNDERTYRLLIGTILENEENAIYVLKIKL
RDYPEYVSNEDELQFQTENEEMYAEMHSQVTILHKSQVNRIRYCPHRQFIIASQASDGNI
YLFDYRNHPSKRGPFDKFEPLVTMEGQKQEGIGLAWNPHKEGVLLSSSRDCCIYEWNVIS
DNDHQTLNPTRIFSSHSAGVEDIDWHAFTSAVFCSVGCDGNLFIWDNRNSENSRPALSVC
AHKQDVNCVSFNPFSEYLLATGSSDKTVAIWDLRNLKESLSILLDHTGEVNEVRWAPQSE
FIIASCSEDCTVNVYDMSHSTSLSESNCSPELIFSHRGHRNPVQSLCWNANEPWLVASIS
NDAVLHLWKIIVSRLH
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaattgtaaacttgtcattgcatcaacattgttaacattacctgcatttcttata
cttaaaatgaatgaaaatgaccaagaaagtattgaaattggacctgattcttccgttgat
aatttttctgatgatcaaacagtttcatctgatgaatttaaaatcaatgaagaagattat
ttgacgtggcggaaaaatgcacttttattgtataacaagttcatttgtcatgaactcccg
gatcccagtatatgcgttcagtggcttccagaaatgaatgatgaacgcacttatcgcttg
ctgattggaacaattttggagaatgaagaaaatgccatttatgttttgaaaataaagttg
cgtgattatcctgagtatgtgagtaacgaagatgaactgcagtttcaaacggagaatgaa
gaaatgtatgccgaaatgcattcccaagtaacaatcttgcataaaagtcaggtgaaccga
atccgctactgtccgcacaggcagttcataattgcatctcaagctagtgatggaaatatt
tatttgtttgattaccggaaccatccttccaaaagggggccttttgataaatttgaacct
ttggtcactatggaaggtcagaaacaagagggcattggtcttgcatggaatccgcataaa
gaaggggttcttctttcttcatctcgtgattgttgtatttatgagtggaatgttatttct
gataatgaccatcaaacactgaatccaacgagaatattttcatctcattctgcaggtgtg
gaagacattgattggcatgcttttacaagtgcagtattttgtagcgtcggttgcgatgga
aatctcttcatatgggataatagaaatagcgagaattcaaggcctgccctttctgtgtgc
gcccataagcaggatgtcaactgtgtttcctttaatccattttctgaatatcttcttgct
acaggttccagtgataagaccgtggccatttgggatctacgcaatttgaaagagtctctt
agtatactgttggatcatactggtgaagtgaatgaggtacgatgggcaccacagagtgaa
tttataattgcatcttgttcagaagactgtacagttaatgtttatgatatgagtcactca
acgtcgctcagtgaaagcaattgctcacctgaacttatattttcacatcgtggtcacaga
aatcctgtacagtctttatgctggaatgctaatgaaccttggcttgttgcgtctatttcc
aatgacgcagtattgcatttgtggaaaataattgtgtcccgtctacattag
DBGET
integrated database retrieval system
