Trichinella spiralis: Tsp_07593
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Entry
Tsp_07593 CDS
T01609
Name
(RefSeq) putative Ku70/Ku80 beta-barrel domain protein
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
tsp
Trichinella spiralis
Pathway
tsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tsp_07593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_07593
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
Tsp_07593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ku
NDUF_B6
Ku_N
Ku_PK_bind
Ku_C
MiaE_2
Motif
Other DBs
NCBI-GeneID:
10903496
NCBI-ProteinID:
XP_003381055
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MDKGKKPTGSSDEVLNTPADTATAGKPLKIVSSSSGHGPKKSYGPWELSFTDAPNPFFYR
PPESSSDAPSHIPSNPMNLELHMKDERSRVVGLTPEEIEWRKKWVLDQKLHPDEPVYVES
AVMHLNPIRRLYRYPWDSLERKVLIPALGLKKGHFVRIVVPKFFIGMLATLCIYYHVKYN
KPNWMNRIRSYHHFPRSFIRNQDLIERDYPGLLDKAFPIPKEPKDFYDLNFSRRVTHLDV
GPPTLEYIPAVCTDDKKKAIMKEAVAICVDIGPGMRERTVAKGRCLLGTVLRCVQWIVQR
RIFSESKDELALILYNTADSKNPLSDIDKNKYILKVLQVCIHCIDEKTLNEKFQQKSIVL
FSSFDANIIINKDDMDNVTKAIKQHQLELAFISCNNDLCASNVEEDNYPKAWKYAKEFIT
AVDGIYCNLNDALNMLGSFQRRSIRSVPWKCNLEFGTILQIPICMYLKCKCYKLNQSWKW
AFAENPYVDVKLERAYVRSWDDEDELLLLSNEEIISSTASKIWSGVEVDSSYLVKAFRFG
SSVVPLNKFDLNEAKYKDREKCFKVLGFFDRCMVKQWHFAGDGTHFVFGDPKSATACQAF
SALIHSCKSNSKVILVRYAYNVASNPKIGVLIPLLKDTYECFVFVILPFEEDLIIVDQKS
IGEFEKCHVTDEQLEAVDKLIDAMNMTDLSSSASSSGDGIFKWSKVKNPYYQNLFRCMTF
RALQPKEKLPFLRDDLLEDVQPNVALLDNAKNAFDLMRKNFILEKVENAKGKRTAAEVFK
NELCDAFPAKVASFHAIDEKIVTMKIGTVNPQSLPDLYNTILRQAKCELFPFFAHTDSLG
LITVDECQSSSISQEDAVSFYSEEVSDEIMKNNPQLPDSTDLIDELE
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggacaagggaaagaaaccaactggtagtagcgatgaagttttgaatactcctgctgac
acggcaacagccggcaaaccattgaaaattgtcagctctagtagtggtcacggacccaag
aaaagctacggaccgtgggaattgtcttttacagatgcaccgaatccgttcttctatcgt
cctccggaaagttcatccgatgcaccgtcgcacatcccgtcaaatcctatgaatttggaa
ttgcatatgaaagatgaacggagcagagttgttggtctgacaccagaagaaattgaatgg
cgtaaaaagtgggttctggatcagaaattgcatccagacgagccagtgtatgttgaaagc
gctgtgatgcatttgaatccaattcgtcgtttgtatcgttatccgtgggattcattggaa
cgaaaagttttgataccggcattaggtttgaagaagggtcattttgttcgcattgtagtg
ccgaaattttttatcggaatgctggcgactctttgcatttattatcacgtaaaatacaat
aagcctaactggatgaatagaatacgttcttatcatcattttccacgaagctttattcgt
aatcaagatttaattgaacgcgactatcctggattattggacaaagcatttccaattcca
aaagaacctaaagatttctatgatttaaatttcagtcgacgtgtaacgcatcttgatgtt
ggtcctccaactcttgaatatattcccgcagtttgtactgacgataagaaaaaagcgatt
atgaaagaagctgttgcaatttgtgttgatattgggcctggaatgagggaacgtactgtt
gcaaagggacgctgtcttcttggaaccgttttacgatgtgttcagtggattgtccaaagg
cggatattttctgaatcgaaagacgaactggcgttaattttgtacaatactgccgactcg
aaaaatcctcttagtgacattgacaagaataaatacattttgaaagtattgcaagtttgc
attcattgtattgatgaaaaaacgttaaatgaaaaatttcaacaaaagtcgattgtttta
ttttcaagttttgatgcaaatatcatcatcaacaaagatgacatggataatgttacgaaa
gcgatcaaacagcaccaattggagctggcatttatatcatgcaacaatgatttatgtgcc
agtaatgtggaagaagataattatccaaaggcgtggaaatatgcgaaagaatttatcact
gctgtggatggaatttattgcaatttgaacgatgctttgaatatgctcggctcttttcaa
agacgttccattagaagtgttccttggaagtgtaatcttgaatttggtacaatattgcaa
ataccgatttgcatgtatttgaagtgcaaatgttacaaacttaatcaaagttggaaatgg
gcatttgctgaaaatccttatgtcgatgtgaaattggaacgtgcttatgtaagatcatgg
gatgacgaagatgaattattattattatcgaatgaagaaattatttcttcgaccgcttcg
aaaatttggtctggcgttgaagtggattcaagttatcttgttaaagcatttcgttttggt
agttcagtagtgcctcttaataaatttgacttgaatgaagcgaaatataaagatcgtgaa
aagtgtttcaaagttttgggctttttcgatcgctgcatggtaaagcagtggcattttgct
ggagatggtacgcattttgtttttggagatccgaaaagtgccacagcttgtcaagcattt
tcagctttgatacattcttgcaaatccaattccaaagttatacttgtacgttatgcatac
aatgtggcgtcgaatccgaaaattggtgtcttgattccccttttaaaggatacctatgaa
tgctttgtatttgtaattcttccatttgaagaagatttgattattgtcgatcaaaagtca
ataggcgaatttgaaaaatgccacgtcactgatgaacaactcgaagctgttgacaagctt
atcgatgccatgaatatgactgatttatcatcatcagctagtagtagtggtgatggaatt
ttcaaatggtcaaaagtgaaaaatccttattatcagaatttatttcgatgtatgactttt
cgtgctttacaaccgaaagaaaaattaccatttttgagagatgatttattggaagatgta
caaccaaacgtagcgttgttggataatgctaagaatgcatttgatctgatgagaaagaat
ttcattttggaaaaagttgaaaatgccaaagggaaacgtacagcagcggaagtgttcaaa
aacgagctttgtgacgcatttccagcaaaagttgcttcttttcatgcaattgatgagaaa
attgttacaatgaaaattggcactgtaaaccctcaatctttgcctgatttgtacaataca
attttgagacaggcgaaatgtgaactctttcctttttttgctcatacagattctcttggt
ttgataactgttgatgaatgccagagcagtagcatttcacaagaagatgctgtgagcttt
tattctgaagaagtatctgatgaaattatgaaaaataatccacaacttccggattcaacc
gatttgatagatgaattggaataa
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