Trichinella spiralis: Tsp_07851
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Entry
Tsp_07851 CDS
T01609
Name
(RefSeq) u4/U6 small nuclear ribonucleoprotein Prp3
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_07851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_07851
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
Tsp_07851
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP3
Prp3_C
Zip
Motif
Other DBs
NCBI-GeneID:
10903747
NCBI-ProteinID:
XP_003381305
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MSFVNFGRVFIDLLLSCCHLCCYVSYVLARTTRTIQGEMHHGRCLSRRRCVGIATKDDNS
SVRVLNVKPVTNEIMGSGVSLTSIDEGKVSTGGVYTSNCSLVQVKPYPNQSSSPQHTYFD
YGKELLSVATGLCSHDHPISSIGQKRHISSIAWMVIFGDAIHNFIDGLSIGAAFSYNLFD
GISVSIAVFCEEFPHELGDVAILISSGMTIRQALFYNILSALTCYIGFVIGVILGEIPHA
SMYIYSLAGGMFMFISLANMLPDMNKKVEDKLKHDFMSGFKLFFIQFSGIVFGLLCMFTL
AMVEKKFLLIYTMNELGKTENKRITKFLKFPKLMKRITEHSSITTLFCFRSVLYFEPSSS
LSYGSFLFNLLNCKVSLLWTMPESEPKEAAKIILKKAIGTTHSKLTHALTKAIDRGYDKT
KMKQKLLEVHSEEEDVEKILNAVFSDSSQLIKPSGRKSRFDRVDDEKSSEIKTSDNLDSV
ASAASAKPALENSKVQEIMLKAQRMIEERKKVLQVNSFPYVVNFEYENSLNSRICQLQPS
KIAPDQAKEFMNASLLRVNRMAELRQSIANKLPALMNYQAVARQPGKPTPLILDSEGRTV
DTDGRAVQLIQRQPTLKVANIRAEKVALFNKAVQETAQATDDRVTENATFFDKRVKVKGP
GRARREFSFKQDGEYVKQANRLRAKCRLERLQQEISLASKKTGISSAVKLAMVVPRVAES
VEAEVPNVEWWDSVILPGETYDVDLDSLNFDIITNLIEHPVQLKPPGEHSDRNCLKVYLT
KKEQKKLRRQNRKETQREKTEKIRLGLEPPPEPKVKISNLMRVLESQAIQDPTKMEAHVR
EQMAKRLKKHEEANLARKLTHEQRIMKRAKKISDDLSTGVHVAVYRVLDLSDPAKKFKVE
MNAKQIHMTGTVVLHKDINVIVVEGGPKQQRFFKRLMMHRIKWEDQQIPGTSKKQSPPNR
CFLIWEGIVKKKAFGEIKFKMCPLEKLAREYFQKHGVEYYWDMAYSRAIMEQNDAESTTA
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgtgaattttggtcgtgtttttattgatttgttgttatcgtgttgtcatctg
tgttgttacgtcagctacgttctggcaaggacaactcgaacaatccagggagagatgcat
cacggtagatgtttgagccgtcggcgatgcgttggtattgccacgaaagatgataattcg
tcagttcgcgttttgaatgtgaagccagtgacgaatgaaattatgggatcgggggtttcg
ttgacaagcatcgacgagggtaaagtcagtacgggtggcgtttatacatccaattgttct
ttggttcaagtcaaaccgtatcccaatcagtcgtctagtccacagcatacttatttcgat
tatggcaaggagttgctgtcagttgccactggtttgtgcagtcacgatcatccgatctcc
tcgattgggcagaaaagacacatatccagcattgcatggatggtcattttcggtgatgcc
attcacaattttatcgatgggctatcgattggtgccgcattttcttacaatctcttcgat
ggtatcagtgtatcaatagcggtcttttgtgaagaatttccacacgaattgggtgacgtg
gctattttgatcagttccggaatgacgattaggcaagctttgttttataatattctttca
gcattgacgtgctatataggattcgtcattggtgtgattttgggagaaattccccatgca
agcatgtacatttatagtctcgccggcggtatgtttatgtttatttcgctggctaacatg
ctgcctgatatgaacaagaaagtggaagataaattgaagcacgattttatgagtggtttc
aaattgttcttcattcaattcagtggcattgtctttggactgctgtgcatgttcacgctg
gcaatggtggagaaaaaatttcttttaatttacacgatgaatgaattgggcaaaactgaa
aacaaaagaattacaaaatttttgaaatttccaaaactcatgaaacgtatcactgagcac
agcagtataacaactttgttttgtttccgaagtgtactgtactttgaaccttctagctca
ctttcatacggtagtttcttatttaatctcctgaattgtaaagtttcgttactttggacg
atgcccgaatcggaaccaaaagaagctgcgaaaattatattaaagaaagcaattggcaca
actcacagcaaactaacccacgcgttgaccaaagcgatcgatcgtggctatgataaaaca
aaaatgaaacagaagttgcttgaagtgcacagtgaagaagaagatgtggaaaaaattttg
aacgccgtattttctgattcgtctcaacttatcaaaccatcgggcagaaagagtcggttt
gaccgtgttgatgatgagaaatcgagtgaaatcaagacgtccgacaatttagacagcgtc
gcttctgctgctagcgcgaagcctgctctggaaaattccaaagtgcaggaaataatgctg
aaagcgcagagaatgattgaagaacggaaaaaagtgttgcaagtgaacagttttccatat
gtagttaattttgaatatgagaattctctgaacagtcgtatttgtcagctgcaaccgtcc
aaaatagcaccggaccaagccaaagagttcatgaatgcatcattgctgagggtgaatcgt
atggcagaattgaggcaaagtattgcaaacaaactgccggctttgatgaattatcaggct
gttgctcgtcagccgggcaaaccaactccactgattttggattccgaaggacgtactgta
gacacagatggacgtgctgtgcaattaatacaacgacagccaacattgaaagtagctaat
attcgcgctgaaaaggtcgcattgttcaataaagctgttcaagaaactgcccaagcaacg
gacgatcgcgttacagagaatgcaacgttttttgataagcgtgtcaaagtaaaagggccg
ggtcgtgctcgtcgagagttttccttcaaacaagacggtgaatatgtaaaacaagcaaac
cgtttgcgtgcgaaatgccgtctcgaacgattgcagcaagagatttcactagcttccaaa
aagacaggcatatcttcagccgtgaaacttgccatggttgttcctcgggtcgcagaatcg
gtagaagcagaagttccaaatgtagaatggtgggattctgtaattttaccaggcgaaact
tatgatgtggatttggattcgttgaattttgatattattacaaatttgattgaacatcca
gttcaattgaagccacctggagagcacagcgaccgcaactgcctgaaagtatatttgacc
aaaaaagagcagaagaaattgcgtcgtcaaaatcgcaaagaaacccaacgtgaaaagacg
gaaaaaattcgacttggactcgaaccaccgccggaacccaaagttaaaattagtaattta
atgcgagtgttggaaagccaagccatacaagatcccacgaaaatggaagcccacgttagg
gagcagatggcgaagcggctgaaaaagcatgaagaggcaaatttggctaggaaacttacc
cacgaacagagaataatgaaaagagcgaaaaaaattagcgacgatctgtcaactggggtt
cacgttgccgtatatagggtgttggatttgtcggatccggcgaaaaaattcaaagtagaa
atgaatgccaagcaaattcacatgactggcaccgtagttttgcataaagacatcaatgtg
attgttgttgaaggagggccaaaacagcagagatttttcaaacggctcatgatgcatcga
ataaaatgggaagatcaacaaattcctggcacgagcaaaaagcaaagtccgcccaatcgt
tgttttctcatttgggagggtattgtgaagaagaaagcttttggagagattaaattcaaa
atgtgccctcttgaaaaattagctcgcgaatattttcaaaaacacggcgtcgagtattac
tgggatatggcttacagcagagctattatggaacaaaatgacgccgaatcaacaacggct
taa
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