Trichinella spiralis: Tsp_07871
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Entry
Tsp_07871 CDS
T01609
Name
(RefSeq) deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_07871
Enzymes [BR:
tsp01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Tsp_07871
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Tsp_07871
Prokaryotic type
Tsp_07871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
10903778
NCBI-ProteinID:
XP_003381336
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MAESNVKTATRQQQSMELYEKSIHLLNAKACNERGKYVLYWVQTSPRVKFNVALELACQK
ANEHQVPVLACFVFPTDKRLDNFPPETERRCVFMLDGLRDFEKRLKKERNIDLVVLYGKC
EILIAKLAENCCEVVVDAGYMRYQNKYDEVNNNIECRFTKVETNVVVPVELVSEKEEFAA
YTIRPKIWKYAKQYLVEPECIMVIAKNKPLFSDNLPLIDLSQSDNVILAKLNADTTVKKV
ANIHGGHSEAVKLLDNFVSKKLPNYDKLRNIPGLDGQSGLSPYINFGHISTVEIILKVNA
SKANKSVKDAFVEQLLVRRELSINFVHYNSENYDSLKCLPKWAADTLKLQAKAKREYIYT
SEQLEKGETHDQYWNACQLELVYEGKMNGYMRMYWGKKVIEWTANHTRKVMNNCAFSMND
KYELDGRDPNGFAGVAWVFGKHDRAHSRRQIFGTLRYMNSSGLERKFKPHLKDYVKHCYE
LAGRSFPSSPVENSTPVAKKRKLLKTTANVSRKVK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagcaatgtaaaaacggcaactaggcagcagcaatcaatggaactgtacgag
aaaagcatacatctgttgaatgcgaaagcttgcaacgaaaggggaaagtacgttctgtat
tgggttcagacttcgcccagggttaagtttaatgttgccttggaattagcatgtcagaag
gcgaacgagcatcaagtgcccgtattggcatgctttgtttttcccactgacaagagactg
gacaattttcctccagaaactgaacgtcgttgcgttttcatgttggatggtctgcgagat
ttcgagaagcggttgaaaaaagaacgaaacatcgatttggtagtcttgtatgggaagtgc
gaaattttgattgccaaattggctgaaaattgttgcgaagtggtcgtcgacgccggctat
atgcgttatcaaaataagtacgatgaggtgaacaataacattgagtgcaggttcacgaaa
gtggaaaccaacgtcgtggttccggtggaattggttagtgagaaggaagaattcgcagct
tacactatacgtccaaagatatggaaatatgcgaaacaatatttggtcgaaccggagtgc
ataatggtgattgcaaaaaataagccgctcttttctgacaatctcccgctgattgatttg
tcacaaagtgacaatgttattctggcaaaattgaatgcagatacgacggtgaagaaggta
gctaatattcatggtggtcacagtgaagcggtgaagcttttggacaatttcgtcagcaaa
aagttgcctaattatgataaattgcgaaatattcctggactggatggccagagcggtttg
tctccgtatatcaatttcggccacataagtactgtggaaattattttgaaagttaacgca
agtaaagctaacaagagtgtgaaagatgcttttgttgagcagttgctggtacgccgtgaa
ttgagcatcaattttgttcattacaattcagagaattacgattctttgaaatgtctaccg
aaatgggcagcggacacgctgaaattgcaagccaaagcgaagagagaatacatttacacg
tctgaacagttggaaaaaggagaaactcatgatcaatattggaatgcttgtcaactggag
ctggtatacgaagggaaaatgaacggttacatgcgtatgtattggggtaaaaaagttata
gaatggactgcgaaccatacgcgtaaggtgatgaacaattgtgctttcagtatgaatgac
aagtacgaattggatggacgcgatcccaatggttttgctggtgttgcttgggtttttggc
aaacacgatcgtgcccattctaggagacaaatttttggcaccctgcgctacatgaatagc
agcggtctggagcgaaaatttaaaccccacctgaaagattacgttaaacattgttatgaa
ttagccgggaggtcgtttccatcgtcgccggttgaaaattccacacccgtggctaaaaag
cgaaagcttctcaaaacaactgctaatgttagccgaaaagtcaagtga
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