Trichinella spiralis: Tsp_08007
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Entry
Tsp_08007 CDS
T01609
Name
(RefSeq) putative elongation factor Tu GTP binding domain protein
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
tsp
Trichinella spiralis
Pathway
tsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Tsp_08007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_08007
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
GTPases
Tsp_08007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
CUT_N
EFL1
EFG_C
CUT_C
GTP_EFTU_D2
EFG_III
EF-G_D2
EFG_IV
MMR_HSR1
ZP-N
Zona_pellucida
SSXT
Motif
Other DBs
NCBI-GeneID:
10906564
NCBI-ProteinID:
XP_003373409
LinkDB
All DBs
Position
Unknown
AA seq
1554 aa
AA seq
DB search
MHFFRLVATRNHANICAIFRISWPYLKLINIRKNCTLKSNASNFYFHDLLQWTDESQSNI
RDNLLFLPNFINEHEEQLLIDEVQRRLKTMRYENAHWDDYCGDVVAGLCLLSDAVMRFRN
VENNNQIVDLLVERRGLYIMRRMDVRNRREFVKQILKIQSTPEFVRNVCLMAHVDHGKTT
LADSLISANGIISQKMIGTLRYMDSLAEEQQRGITMKSSSISLLYRNGYDSFLINLVDSP
GHVDFSGEVCAAAVLCDGAVVLIDVIEGVCPQTSASLRLAWKEGLKPCIVLNKIDRLFVE
YRMNPMDAYRRLVQVLEQANAVAGELFVSREIEKEDFLSRRRRSMSRSSLRKSESAEEML
YFMPETGNVVFASALDNWGFRLRDFARFWSKRLQTEEELLLQALWGDYYIDSKTKLPVFG
ASDKGKSPLFVVMILNNLSAIYDAMIINAEKGRIEKILNSLQLDVVGKEFAKSDSRQRLQ
IVMSRWLPLAECVLGMVCELLPSPKHLDNDRIERIMCGDRFAHCDCLEPKAREMKPLFKE
CSMEVDCATTLFISKMIAVEEDLLRGKNKFMLPNSVECNYWLQAADKVEPSTGQCVFLGF
ARIFTGNLCSGDVLHWIPDYAMVQSGNATLREITIGQLYVMMGREFEAVDQVCAGNLVCI
GGVQDLVARTATLSTDSNCPPLCDSGFYAKPIVQVSVEPKNTRDLPALVRGLKMLNLADG
CVQALVEDSGEHVLTAVGEIHLHRCIKDLCDRFANGIDLIISDPVVPFNETIVPVTPAVV
DSTNETTTTTTSTQSEKVDRSITVTTAGRTITIVTEAVPLPEPIQQILEENEPLIAMIDP
VTNRIDVTGNTAGRLASIRDGFDEIREQLINVCSNLGKQWSNIVQRLWAFGPRRAVVNLL
LNGIDDYVRPNFFDILLDQHFDSRTVYNLGLRQYDQSIVAGFHICCKAGPICEEPIRGVA
FLVKSWDSVDNVDSMESIFGPLSGQLIVAMKEGCREAFQAQPQRLMLPMYTCIIQATGDV
LGRVYSVLHRRSGKVINEEMKEGTNLFQIVASIPVVECFGFADDLRKRASGLAWPQLVFS
HWEVLTMDPFRLPTADDEISHHGEKVEWENSAMRYVNMIRKRKGLSVNEKIVQHAEKQRT
RAKKIFSVNAFLDNDVISEFGKLYFTNCCNKFVCSEEPAVVCDHDRIMFTFETKNPFTGH
VFVKGKYDDPNCRQDFLDNKSNGATVSIRIPQCGMRRIRQLQPQATSYSVTFIVNFHPEF
ITKFDKAFNVRCFYSQQDKIVTAQLELILACLSRTVMLVMALDVRCPTFSPGIQGNLNYD
ASLNTASVKVWAYKFPDRADLFFQCQIQICNKQSNECAAITPPHCPVASESNWTESQLST
TTSESVTYVIGSFEQPENEKMEIPHLPGYGRRSRAVDWDRPSGIELDNLTQQLHSALKEV
EFAASKTADNLTSSNSKRFLSEKDEYAFRKENDVTFSVATDIVYIADKDDTNNYPSESTE
KSSATCFSRTAFAMLLYSYTMLIILVLFLTCKLGGFLNACSKRTIHSKTVRQDS
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttttcgacttgttgcaacgagaaatcatgcaaatatttgtgcaatatttcga
atcagttggccatatttgaaactaattaatataagaaaaaattgcacactgaagagcaat
gcaagcaatttttattttcacgatctcctgcaatggacggatgaatctcagtcgaatatt
cgggataatttgttatttttgccgaattttatcaacgaacacgaagagcagcttctaatt
gacgaagtgcagaggcgattgaaaaccatgcgttatgaaaatgcacattgggatgattat
tgtggtgacgttgttgctggcttgtgtcttttgtcggatgcggtgatgcgatttcgtaat
gttgaaaacaataatcaaattgttgacttgttagtggaacgtcggggtctctacattatg
cgccgaatggatgtaagaaatcggcgagaatttgtaaagcagattttgaaaattcagtca
actcccgaatttgtgcgcaacgtgtgtctcatggcgcatgttgatcatggcaaaacgaca
ctggccgattcgttgatatccgccaacgggatcatatcgcaaaagatgatcggcacgttg
agatacatggacagccttgcggaagagcaacagcgaggaattacgatgaagtcgagttcg
atatcgttgttgtacagaaacggatatgattcgtttttgatcaatcttgtcgattcgccc
ggtcatgtggatttttccggcgaagtgtgcgcggcggcggtgctctgcgacggcgccgtc
gtactgatcgacgtgatcgagggtgtctgtccgcagacgagcgccagcttgcgtctcgct
tggaaagaaggcctgaagccttgtattgtgttgaacaaaatcgaccgactgttcgtcgaa
tatcggatgaatccgatggacgcgtaccgacggcttgttcaagttttggaacaagcgaac
gcggtcgccggcgaattgttcgtttcgcgtgaaattgaaaaggaggactttttgtcccga
aggagacgttccatgtcgaggagttcgttgagaaaatccgaaagtgccgaggagatgttg
tacttcatgcccgaaactggcaacgtcgttttcgccagtgcgttggacaattggggattc
cggttgcgggattttgccagattttggtccaagcgtctgcagacggaggaagaattgctg
ctccaagcactgtggggtgactattacatcgactcgaagaccaagttgccggtgttcggc
gcgtcggacaaaggcaagagcccgttgttcgtggtgatgattttgaataatttgtcggcc
atttacgacgcgatgatcatcaacgccgaaaagggtcgaattgaaaaaatactcaactca
ctccaattggacgtggtgggcaaggagttcgccaaaagtgacagccggcaacgtttgcaa
atagtcatgtcgcgatggttgccgttggccgagtgcgttttgggcatggtgtgcgagttg
ttgccgtcgcccaagcatctggacaacgaccgcatcgagcggatcatgtgcggcgatcgg
ttcgcccattgcgactgtttggaaccgaaagcgcgggagatgaaacccctgttcaaggag
tgttcaatggaggttgattgcgcaacgacgctgttcatttcgaaaatgatcgccgtcgag
gaagacttgcttcgaggcaagaataaattcatgctgcccaactcggtcgagtgcaattat
tggcttcaggctgcggacaaagtggagccgtcgaccggtcagtgtgtgtttcttggtttt
gcccggatattcaccggcaatttgtgttcgggtgacgttttgcattggatcccggattac
gcgatggttcagtccggcaacgcgacccttcgtgaaatcaccattggtcaactgtacgtg
atgatgggtcgagaattcgaggcggtggaccaagtgtgcgcgggcaatttggtctgcatc
ggcggtgtgcaggatctggtcgccaggacggcgactttgtcgaccgattccaattgtcca
ccattgtgcgattcgggcttctacgccaaaccgatcgtccaagtgtcggtcgagccgaag
aacaccagagatttgccggcactggttcggggtctgaagatgctgaacttggccgacgga
tgtgtgcaagcgttggtcgaagattccggcgagcacgtgctcacggcggtcggggaaatt
cacttgcaccgttgcataaaggacctgtgcgaccgcttcgccaacgggatcgatctgatc
atatccgatccggtggttccgttcaacgagaccattgtaccagtgacgccagcagtcgtc
gactcgaccaacgaaaccaccaccaccaccacttcgacgcaaagtgaaaaagtcgaccga
tcgatcacggtcaccacagccggcaggaccatcaccattgtcaccgaggctgtaccgttg
ccagaaccgatacagcagatacttgaagagaatgagccgttgatcgcgatgatcgatcct
gtgaccaatcggatagacgttaccggcaacacggccggtcgactggcatctatccgggac
ggtttcgacgagatccgcgaacagttgatcaacgtttgcagcaatttgggcaaacagtgg
tccaacattgtgcaacgtctttgggcgttcggtccacgcagagctgtggtcaatctcctg
ttgaacggcatcgacgattacgtccgacccaactttttcgacattctgctcgaccagcat
ttcgactcgagaacagtatacaatttgggtcttcggcaatatgatcagagtattgttgcc
ggtttccatatttgctgtaaggccggtccgatttgtgaagagccgattagaggtgtggca
tttctggtgaaatcttgggacagcgttgacaacgtcgacagcatggaaagcatttttggt
ccactgtccggccagttgattgtcgccatgaaagagggctgtcgcgaggcgttccaagcc
cagcctcagcgtttgatgttgcccatgtacacgtgcattattcaagctaccggcgatgtg
ctcggacgtgtctattcggttttgcacagacgatcaggaaaagttattaacgaggagatg
aaagaagggacaaatttgtttcaaatagttgcctctattccggtagtcgagtgtttcggc
tttgctgatgatttgagaaagcgagctagcggtttagcttggccacaattggttttttct
cattgggaggtcttgactatggatccgtttcggcttccaacggccgacgacgagatttcg
catcatggtgagaaagtggaatgggaaaatagcgccatgcgttacgtgaatatgatccga
aaacgtaaaggattgtcggtgaatgagaaaattgttcagcacgctgaaaagcaaagaact
cgagcgaaaaaaatattttcggtaaatgcttttctggacaatgatgtcattagtgagttt
ggaaaattgtacttcaccaactgttgtaataaatttgtttgttcagaagagcctgcagtg
gtttgcgatcacgatcgaatcatgttcacttttgaaacgaaaaatccattcacaggccac
gtatttgtcaaagggaaatacgatgatccgaattgtaggcaagattttctggacaataaa
agcaacggcgccaccgtttcaattcgcataccgcagtgcggcatgagaagaattcggcag
cttcaacctcaagcgactagctattcagtgacttttattgtcaatttccatccagaattt
ataaccaaatttgacaaagctttcaacgttcgctgtttctattcacaacaagacaaaatt
gtcactgctcaactcgaactgattttggcatgcttgtcaagaactgttatgttagtgatg
gcgttggacgttcggtgcccaacgttttcacccggcattcaaggaaatctgaactacgat
gccagtcttaatactgcatccgtcaaagtttgggcttataaatttcctgaccgtgctgat
cttttttttcaatgccagatacaaatctgcaacaagcaaagcaacgaatgcgccgcaatt
acgcctccacattgtccagttgcatcagaatccaattggacagaatcccaattgagcaca
accacttcagaatctgtgacgtacgtcattggcagttttgagcagcctgaaaatgagaaa
atggaaataccacaccttccaggttacggtagaagaagccgagcggtggactgggataga
ccaagtggaattgaacttgacaacttgacgcagcagctgcattcagcattgaaggaggtt
gaatttgctgcttcgaaaacggcagataatttaacatcatcaaacagcaaaagattccta
agtgaaaaggacgagtacgctttcaggaaagaaaacgatgtcacgttcagcgttgcaaca
gacatagtttacatagcggacaaggacgatacaaacaattatccatccgaatcaacagaa
aagtcaagtgcaacatgtttcagcagaactgcatttgcaatgcttttgtacagctacaca
atgctgatcattctagttctttttctgacgtgcaaacttggcggatttctcaacgcctgc
tcaaaacgaacaattcattccaaaaccgtacgccaagattcatag
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integrated database retrieval system
