Trichinella spiralis: Tsp_08016
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Entry
Tsp_08016 CDS
T01609
Name
(RefSeq) transcription initiation factor TFIID subunit 2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
tsp
Trichinella spiralis
Pathway
tsp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Tsp_08016
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tsp01002
]
Tsp_08016
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_08016
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_08016
Peptidases and inhibitors [BR:
tsp01002
]
Metallo peptidases
Family M1
Tsp_08016
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
Tsp_08016
Coactivators
SAGA/TFTC/STAGA complex
Tsp_08016
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
Tsp_08016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tetraspanin
Peptidase_M1
Peptidase_M1_N
DUF7296
Motif
Other DBs
NCBI-GeneID:
10906573
NCBI-ProteinID:
XP_003373418
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MVFPNAPKQRVICLNCSNQCKIKRIYFNKGSNAYFEHKNFIETMNRDFDEMPNETLVKGL
SELAEKMDPDTGVAELKVRIPPEIWHKVDSMKSIRVHIDFIVEKPTYGVRFIHNVDKNKV
WKNYSHVYSWKHSNYESRAWFPCFDSPSKLCLWRLSVTCDLNLTAVCSGNLQDVSINDSL
TQKTYLYLMNSPTPACNIGFAVGNLDLYVHPEMNELSCFCLKNYLPDLKCTMEHLNRVFE
FYEELLSLRYPHSSFKMVFVHDLPLDSVSYSTLALVDASFLFNEKVIDQQAITREMIAVC
VAQQFYGCFVVQGNWQERWFAEGLALYLSKMYVQRTFGQNEYMYQISKLLDEVIDYEKKH
GGIVLLPRDESNEDRISDSSSPFFNNPVHADILMKKAVLIFRLLEFKITKELFYQVLNKL
LSVAMLASKEALKPSAWMNMCLTFDSFTRCVSNVCGMDLGTFFDQWVHQGGHAEFSCHSK
ARRHRKRKIPIWTGDEIDMDLSAMDSESPVLWILVDPRLNTIRKVNIDQPDYSWHYQLRY
ERIIVAQLDALKGLPKMRTVHTQAALSEIIESSQCYYRVRCAACFALASMSSANTAVCNP
HAVLVQLFRKLFCSQNYPTLAKPNNFTNFQLYYLKKALLLAISQLKTVHDTISTDVLQFV
YHLSYYNTNSGNRYSDDAYRATIIKAIGNMVQPFAVLNSDAMEFSIRHFVDQFAQHDAYR
ARHLLMKLFKEIIISLALDAKFPSYRDEITVAALHSLAEFQYWKLIDCDNRLWLSYLDFN
RPPIVRRAAFEAFLRILIRENDSSLFGQLIQLMANQEDSSFRRFVAVKLLKCLIFDEVSF
PTLPNELCPASDYVSLLLPLMYPFGQSSDWNLISCLVHFLVISRKPKTLSGIGLIVVGAV
IQIKYSNYINFLGDTFLSTPILLIIVGCILSVLGFFGCCGAIRENYCMTMTFAVLLGVIF
ILELAAGIASYVLRNDVSMEVLFYVFFVCIVFVHFKVEEIIGEHAKIGMDNYNQTGADGV
TLAWDALQTQFECCGTNNYTDWSYTKFEKIPTSCCRVQSPTCTSDLDVKWLSAKSDVIYV
DGCINRLKEWVVSNAAIVGGVGCGVAIVQSIGMLLTCYFASAARL
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggtttttccaaatgctcctaaacagcgtgtcatctgtttgaattgttccaatcagtgt
aaaataaaacggatttatttcaataaaggatcgaacgcttattttgagcacaaaaatttt
attgaaactatgaatcgtgattttgatgaaatgccgaatgaaactctcgttaaagggtta
tctgaattagcagaaaaaatggatccagatactggtgttgctgaattgaaagtgagaatt
ccgcctgaaatttggcacaaggtggattcaatgaaaagtattcgagtgcacattgatttc
attgttgaaaagccaacttatggtgtacgatttattcacaacgtggataaaaataaagtt
tggaaaaattatagtcatgtgtacagttggaaacattccaattacgaatcacgagcgtgg
tttccttgctttgattctccgtcaaaattatgtctttggcgtttaagtgttacctgtgat
ttgaatttaactgccgtttgttcgggaaatttgcaggatgtatccataaatgatagttta
acacagaaaacctacttgtatttgatgaattcgccaacacctgcatgtaatattggtttt
gctgttggaaatctagacctatatgtacatcctgaaatgaatgagttgtcgtgtttttgt
ttgaaaaactatcttccagatttaaaatgtacaatggagcatttgaacagagtattcgaa
ttttacgaagagcttttgtctttgcgatatccacattcatctttcaagatggtttttgtt
catgatcttccactggatagtgtatcttattctacactggcattagttgatgcatcgttt
ttgtttaatgagaaagtgattgatcaacaagcaattaccagggaaatgattgccgtgtgt
gttgcgcaacaattttatggttgttttgtggtacagggaaactggcaggaacgttggttt
gctgagggtttggcactgtatttgagcaaaatgtatgttcagcgaacatttggacaaaat
gaatatatgtaccaaatttcaaagctattagacgaagttatcgattatgaaaagaagcac
ggaggtatagtgctactgccacgtgatgaatcaaatgaagacagaatatcggattcgagt
tctccgttttttaacaatccagtgcatgcagatattcttatgaaaaaagcagttttaata
tttcggctacttgaattcaagattaccaaagaactcttttatcaggttctcaataaattg
ttgtccgtggcaatgcttgcttcgaaagaggctttgaaaccttctgcatggatgaacatg
tgtttaacatttgattcatttacgcgttgtgtttcaaatgtttgtggcatggatttaggt
accttttttgaccagtgggttcaccaaggtggtcatgctgaattttcatgccattcgaaa
gcaaggcgtcatcggaagcggaagattccaatttggactggcgatgaaatagacatggat
ttaagtgctatggactcggaaagtccagtattgtggattttggttgatcctcgtttaaat
acgattcgcaaggtgaatattgaccagccagattacagttggcattaccaactgcggtat
gaacggataattgttgcacagttggatgcgctgaaaggacttccaaagatgagaactgta
catacacaagctgcattgtctgaaattattgaaagcagccaatgttattatcgggtccgt
tgtgcggcttgttttgccctggcaagcatgtcaagcgcaaatacagccgtttgtaacccg
catgcagttttggtgcaattatttcgaaaattattttgttctcagaattatcctacactg
gctaagccaaataattttaccaattttcaattgtactatttgaaaaaggcactgctgttg
gcaatatcacaactgaagactgtgcacgataccatatcgacggatgttttgcagttcgtc
taccatctttcttattataatacaaacagcggcaatcggtattcggacgacgcttacaga
gcgactattattaaggcgatcggcaatatggtgcaaccgtttgcagtgttgaattcagat
gcgatggaattttcgatccgtcattttgtcgaccaatttgcgcaacacgatgcgtacaga
gcgaggcatctattaatgaaactgttcaaagaaataataatctcgttggcattggatgcg
aaatttccaagctacagagatgagatcaccgttgcagctttgcattcactggccgagttt
caatattggaaactgattgattgtgacaacagactttggttgagctatttggatttcaat
cgtccaccaatcgttcgtcgagctgcttttgaagcttttctcaggattctcatccgtgaa
aatgattcatcattatttggacagcttattcaactgatggccaatcaggaggattcatct
tttcgaagatttgttgctgtaaaacttttgaaatgtttaatattcgatgaagttagtttt
ccgacattgccaaatgaactgtgtccagcatcagattatgttagcttattgcttccacta
atgtatccttttggtcaatcatcggattggaatttaataagctgtctagttcattttctt
gtcatatcccgtaaaccaaagacattatctggaattgggctgattgtcgttggagcggtt
atccagataaagtattcaaattacataaattttctgggcgacacttttctctccactccc
atattgctcatcatcgtcggatgtattctttcagtgctaggattcttcggctgttgtggt
gctatccgcgaaaattactgcatgacgatgacttttgccgttttgttaggcgttattttc
attttggaattggctgctggcattgcttcatatgtactacgaaatgatgtgagtatggaa
gtattattttatgtattttttgtttgcattgtttttgttcatttcaaggttgaagagatt
attggagaacatgctaaaattggtatggataattataatcaaactggcgctgatggtgtc
accttagcctgggatgctcttcaaacacaatttgaatgttgtggcacgaacaattacact
gattggagttacacgaaatttgaaaaaatacccactagttgctgccgtgttcaatctccg
acatgcacaagcgatttggacgtgaaatggctcagcgcaaaatcggatgtcatttatgtt
gacggttgcatcaatcggctgaaagaatgggttgtcagcaatgcagcaattgttggtggt
gtcggctgtggcgtggctattgtgcagagcattggcatgcttttgacctgttactttgca
tccgctgctcgtttatag
DBGET
integrated database retrieval system
