KEGG   Trichinella spiralis: Tsp_08100
Entry
Tsp_08100         CDS       T01609                                 
Name
(RefSeq) WD repeat-containing protein 61
  KO
K12602  WD repeat-containing protein 61
Organism
tsp  Trichinella spiralis
Pathway
tsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tsp_08100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_08100
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     Tsp_08100
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta EIF3I WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_ACSF4 Beta-prop_Aladin WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR41 Tricorn_2nd WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_NWD2_C WD_LRWD1 Beta-prop_WDR75_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_LRRK2 WD40_like WDR54 Beta-prop_DCAF4 NHL Beta-prop_IP5PC_F SdiA-regulated B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 10906661
NCBI-ProteinID: XP_003373506
LinkDB
Position
Unknown
AA seq 315 aa
MFRLVHKVEDVHSDGILTSCWSRKGSEEYIVTAGLDNNMIVWQRERGRGFVATRLLEGHI
GPVACTKATPDGRWDNCINACCVEKQFFKNMVSASTDNLMNVWDPTTGEQFSSIQCDPME
NSLAVLSPDGDLVVTCSRHGKFLVFKMMTGERVYESESTTRYYYSLDYSPDGKYIAVGSN
EGIVYLYDTESYQLIGSAHTRSIRGLTFSCDSKLLFSGSEDKNIKVWDIGSFPNVITSSY
GHLSFVTDIAVSQNPDVFASASSDHTVKIWDMTTGRCIQTLADHVSHVWSANFNHDGTRL
LSVSDDETMNFYREI
NT seq 948 nt   +upstreamnt  +downstreamnt
atgtttcgacttgtacataaagttgaagatgtgcattctgatggcattttgactagctgc
tggtcgaggaagggatctgaagaatatattgttacagctggtttggataataatatgata
gtgtggcaaagagaacgaggcagagggttcgtagcgacgcgtcttctggaagggcacatt
ggaccagtcgcttgtacaaaagcaacgcctgacggaagatgggataactgcattaatgct
tgctgtgtggaaaagcaattttttaaaaatatggtctctgcttcgacggataatctgatg
aatgtttgggatccaacaactggtgagcaatttagtagcatccagtgtgatcctatggaa
aattctttggccgttttatcgccagatggagatttggtcgttacatgcagcagacatggg
aaatttttggtgttcaaaatgatgacaggagaaagagtttatgaaagcgaatcgacaaca
agatactactattctcttgattattcgcctgatggtaaatacattgctgttggttcgaat
gaaggtatcgtttacttgtacgatactgagtcatatcagcttatcggttctgctcatacc
aggtccatacgtggactgactttcagttgtgattcaaagcttttatttagtggttcagag
gataaaaacatcaaagtttgggacattggttcattccccaatgtcatcacttcctcttac
gggcacttatcttttgttactgacatcgccgtttcacaaaatccagatgtgtttgcatct
gcatcaagtgatcacactgtgaaaatttgggatatgaccacaggaaggtgcattcaaact
ttggctgatcacgtctcccatgtttggtcagcgaatttcaaccatgatggcactcgcctc
ctttctgtctcagatgatgaaacaatgaacttttacagagaaatttaa

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