Trichinella spiralis: Tsp_08837
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Entry
Tsp_08837 CDS
T01609
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
tsp
Trichinella spiralis
Pathway
tsp03430
Mismatch repair
tsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Tsp_08837
03460 Fanconi anemia pathway
Tsp_08837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_08837
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
Tsp_08837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
ISPD_C
Motif
Other DBs
NCBI-GeneID:
10897854
NCBI-ProteinID:
XP_003374110
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
MDDLSRMKTFGFRGEALCALCLIGDVIITTRHADSELAYQLHFDRSGQLTKQVACSRQVR
QIIGTTVEVAEIFHPFPVRRKSLIRSVQKEWPKLMHMLQSYALLPSALRLQVVNKQKGGK
QSVAFSALSSENLRENICSVFDVGQLRLLMEFVQTVPNEETLEQYLVKNFDPAEIDKIKI
VGFVSSVQQGRSSGDRQFTYVNNRPCEIRKITQLVNEVYHQFNPVQYPVFVLYINVPTAE
MLDVNCTPDKRLVYISRENLLLAILRHSLTEMYGQSSVIMSCSSRWKTLDTPQIEDATVS
DVVGNIAASDNNLSPDCSSCSTAGGSSSNKVNLVRGVKRLSSRNCRQDHQLVPIRTSDIL
EAFGFKSKEKKSRRHKEEGQRLHGAEDGGNGWQQGGIDAVQLVASTSGERMRISCCEPLD
DEAAVKNFSHGTADCTRTVQESLPSVVHSTTDEAAKFKPTADPRVTIPAATMEVISGQQL
STCGKSESAEIEVSKSVECVSSRGGVCIARKYYDLQVNWDDLEIRLLGLIKTFGNNNNCA
KTSFNDMNNRKFQINVDPAKDAQAEEEVKRFLTRDMFAEMHVIGQFNCGFILTRLDDDLF
ILDQHASDEKRTFETMRRSTVVQSQLLVHPICSNLTPFDRHVILENLETFKNLGYTFQFP
PEGSDEPVKIVSLPVCHGQIFDQRGDTTDNILTSNSSFRVGNLCMPTKIRSILASRACRK
SVMIGTALSMEEMQQIVERLSSIEHPWNCPHGRPTVRHLINLATF
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctgtctcgcatgaagacatttggctttcgtggcgaagctctgtgcgcttta
tgcctgattggcgacgtaattattacaactcgtcatgctgattctgaattggcttatcag
ttgcactttgatcggtctggtcagttaactaaacaagtggcctgttcacgtcaggttcgc
caaattattggtacaactgttgaagtggcagaaatttttcatccatttccagttcgaaga
aaatcgctaattcgaagtgttcaaaaagaatggcccaaactgatgcacatgcttcaatcg
tacgcattgttgccatcagcacttcgcttgcaggttgttaataagcaaaaaggaggtaaa
cagtcggtcgcgttttccgcattgagcagtgaaaatttgcgcgaaaatatttgctcggtg
ttcgacgttggtcagctgagattgttgatggaatttgttcaaactgtacccaacgaagaa
acccttgaacaatatttggtgaaaaatttcgaccctgcagaaattgacaagatcaaaatt
gtcggcttcgtgtcaagtgtgcaacagggccgttccagtggagacagacaatttacatac
gtcaacaatcgtccctgtgaaattagaaagataactcaattggtcaatgaagtgtatcat
caattcaatccagttcagtatcctgttttcgttttgtacatcaacgttccgacagcagag
atgcttgacgtgaactgcacgcctgataagcgtttggtttacatatcgagggaaaatttg
cttttggcaattttgcgacactcgttgaccgaaatgtacgggcaaagttctgtgataatg
tcttgttcgtcacggtggaaaactttggacacgccccaaattgaagacgccacagtttcg
gatgttgtcggcaacattgccgccagtgataacaacttgtcacccgattgcagcagttgt
tccactgctggcgggagcagcagcaacaaagtcaaccttgtcagaggtgtgaaaaggttg
tcgtcccgtaattgtcgtcaagatcatcaactggtgcccattcgaacgtcggatatattg
gaagcgttcggtttcaaatcgaaagagaagaaaagcagacgtcacaaggaggaggggcag
cggcttcacggtgcagaggatggtggcaacggttggcagcagggtgggattgatgctgtg
cagttggtcgcttcgacgagcggcgaaaggatgagaatcagctgttgtgaaccgcttgac
gatgaagcagccgtaaaaaacttttcccacggcacagctgattgtacaagaacggtacaa
gaatcgttgccgtcggttgttcattcgactacggatgaggcggccaagtttaagcccact
gccgatcccagggtaacaatcccggcggcgacgatggaggtgatcagcggacaacagctg
tccacttgtggaaaaagcgaatccgcagaaattgaagtttcaaaaagcgtggaatgtgta
tcctcacgtgggggtgtgtgcattgcgcggaagtattacgatttgcaagtcaactgggat
gatctggaaatacgtttgcttggattgattaaaacttttggtaacaacaacaattgtgca
aagacgagcttcaatgacatgaataataggaaatttcaaatcaacgttgatcctgccaaa
gatgcgcaagctgaagaagaggtgaagcgatttttaactcgagatatgtttgctgaaatg
cacgtaattggtcaattcaactgtggcttcattttaacccgtctagatgatgatcttttt
atacttgatcaacatgccagcgatgaaaaacgaacatttgaaacaatgcgacgttcgaca
gttgttcaaagtcagctgcttgtccatccaatttgctcaaatcttacaccgttcgacaga
catgttattttggaaaatttagaaacttttaaaaatctcggttacacttttcaatttcca
ccagaaggaagtgatgaacctgtgaaaatagtttccctgcctgtttgtcatgggcaaata
tttgatcaaagaggtgatacgacagacaatattttaacatcgaattcttccttccgtgtt
ggtaatttgtgtatgccaacgaaaataaggtcaattttggcttcgagagcatgtcgcaag
tctgtaatgattggcaccgctttgagcatggaagaaatgcagcagattgtcgaaaggcta
tcctcaattgaacatccttggaattgtccacacggtcgtcctactgtaaggcatttgatt
aatctagcaacattttga
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