Trichinella spiralis: Tsp_09083 Help Entry Tsp_09083         CDS       T01609                                  Name (RefSeq) hypothetical protein   KO K24155   rabconnectin-3a Organism tsp  Trichinella spiralis Pathway tsp04142   Lysosome biogenesis Brite KEGG Orthology (KO) [BR:tsp00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome biogenesis     Tsp_09083  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tsp04131]     Tsp_09083 Membrane trafficking [BR:tsp04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     Tsp_09083  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     Tsp_09083    RAVE complex     Tsp_09083 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Rav1p_C Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_IFT122_1st WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd WD40_RFWD3 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_NOL10_N EIF3I WD40_MABP1-WDR62_2nd ASA1 Beta-prop_Vps41 PMT_4TMC MIOS_WD40 Beta-prop_CAF1B_HIR1 Motif Other DBs NCBI-GeneID:  10902805 NCBI-ProteinID:  XP_003382239 LinkDB All DBs Position Unknown AA seq 1630 aa AA seqDB search MADGTTTHARNDYDSLLDDGLLKYKIESDPLDDPNPIDHNTTDQEEEVASGVENSNTFGS KEAALLSSMLTHIHLPGLSSLDQLYLLAIADTISSIKPGSFEQLNFTTKFFNSTFNPRTV LVNQTSTTGLSAEAVDECGLRYLMSVRHFEYLLRCLPLPQRAALRANGLPSANLIWALHS ESENELFNSLSCVQRNEANWSDLRSLGVGWWLKSLQSLRLCFEKIAKAAFQAKNDPMDAA LFYLAMKKKNVLMHLFKTVRDVKMTEFLSHDFTDAKWKKAALKNAFVLMSKQRFEHAVGW FLLGDSLNDAVKVCLANMNDLQLALVIIRLYEGDSDLARRLIRKVLCEQVLQCEEELFEK TNDQSRSMDSVLSSVDSGGSDPFQRSIALWLMGEPALAASTLLSSSAEPCLRGDPLAADY SSSDVFNFYVYIRAHPLVLRRRLADQGIYFDHAAKFQRAARRMVSRVSTSERMLFFKTAF VHLQGGCPLLALEVLCKLPDCDQIDDDNDGITVEVKQQNNNSDDHTNATVTATTTTNNNN NNGGNENHSLDQVWQFGDQADYLLNRRDDVDELKFDWNDENNSNVAEEEEEEEEQQQQQQ QVLETKQTSSSGEPAMDMFAQTLKFIACMKMLTEELANLISGFELDIGQMRDQLYKWLEN EVDVLKLVCDYRVNVNRCGSPPLPVVEVTYGQGSPTQLHEAIHHDRAELAERWQRTIKRH RWLVAHQQVLRTLAYFCSLHCSRSPGLAASRMELLLLIQELTQNLSRSKLTVRMPLFASF PLMSAALGSIKSAVALPLRYILSQTSDILITLSELQNPPTFQQPVQEIHLLYNLCQCLSS SVFCSLCDLGEIINSKDEFLTESNSYLQRNIFRRNSAYQQNPIQVTSKPSQWPGIDLSSS FLTTDRDEDVPNLLILLVETWTSIYLSLFAYCMYAYDSRWLYRLMAHPVNESLFATVFGG SGERQLLVDTLNSTVQNKGSCSSGSSDGSYSKNDTEGTMEQLDSAKLRAKFHYKVFGKSA SNPSQATTGHRLVSSRLEWVQPKKSIIAYYTSKPPLLMEEEEQFGYDSDDSEQNSESESE NEDADESTYESRAEEESKEHSNPNSYSWQIIRLALVRQATHRVRQFLAVAGIDCSELGST SPLVYSCLKMLNCWTNILTNQLNNFPGGCPDHFLPSSDLHDLTGGPALHKYRTILEPQNT PFRGNSRSVLPVRRLWLYLVRQEHLMDVDESNGVSPDVNILPEAFKVVQREHDPINAFVI HPNRFGLVAVSSGRELQEMDVSALFSPTIDWIQEQTDLDLVMAGMKKNPLIDNDDYLLIT PQERRDGTLVTGRGTTYLTPFIVDRSRYALRKAIANESVARLERYFGESLPPVVFANVMF LEYDDLKHTRHFHSVRNLSGANDGSVRLWEWGVGQPLYTPRVGGRFGKVTQTRFCAQGNK NMKCHSKICNDFVFLGQSSSLLATAGQGSVDAAISLWDTLLPPNRYNVHTWNCHTDVTNC LLHVPNQQTLLCGGKHGDLHVWDVRQRQLRLTVKLFDSSGVRSLAMDPTFTFFAAGSTDG DIKVYNLNPNPQLVFHFPHEHSNRSTFSLRQVGSANQIHGVQMMYIDQQQRLYSCGADCS FKLRVLPPIF NT seq 4893 nt NT seq  +upstreamnt  +downstreamnt atggccgacggcaccactacccatgctagaaatgattacgacagtctactcgacgatggt cttttgaaatacaaaatcgaatccgatccgctcgacgatccaaatccaatcgaccacaac actactgaccaagaagaagaagttgcatccggtgtggaaaattccaacacttttggcagc aaagaggcggcattattatccagcatgttaactcacatacatttgccaggtttatcgagc ttggatcagctgtatctgcttgccattgcggatacgataagttcgatcaagcctggttct tttgagcagttgaattttaccacgaaattcttcaattcaacttttaatcccaggacagtt ctggtgaatcagaccagtaccactggtttgtcggcagaagcggtggatgagtgcggtttg cgttatttgatgtcagtcaggcactttgaatatttgctgcgttgcttgccgttgccacaa cgtgctgcgttgcgtgcaaatgggcttccatcggcaaatttaatttgggctttgcattcg gaaagtgaaaatgaattgttcaattcgttgtcttgcgtccaaaggaacgaagccaactgg tccgacttgcgttcattgggtgtcggttggtggttgaaaagtttacaatcgttgcgactt tgtttcgaaaaaattgctaaagctgcattccaagcgaaaaatgatccaatggacgctgcg ttgttctatttggcgatgaagaagaaaaatgtgcttatgcatttgttcaaaactgtgcgg gatgtgaagatgacggaatttttgtcacacgatttcaccgatgccaaatggaaaaaggcg gccttgaagaacgcttttgtgctgatgagcaagcaacgtttcgaacacgctgttggttgg tttttgctcggtgattcgttgaacgatgcagtgaaggtctgtttggcaaatatgaacgat ttgcagctggcattggtgatcatccgtttgtacgagggtgattcggatcttgctcgacga ttgattcgcaaagtgctctgtgaacaagtgttgcagtgcgaggaggagctatttgagaag acaaacgaccagagccgaagtatggattcggtgttgtcgtcggtcgacagcggtggatcg gatccattccaacgatcgattgctttgtggttgatgggtgagccggctttggccgcatcg acgttactgtccagctctgcggaaccatgcttgcgtggagatcctctggctgctgactac agttcgtcggatgtgttcaatttttacgtctacattcgtgcgcatcctttggtactacga cggcggttggctgatcaaggaatctactttgatcatgctgcaaaatttcagcgggcggct cgtcgtatggtcagtcgggtgtcaaccagcgaacgaatgttgtttttcaaaaccgccttt gttcatttgcaaggcggttgtccgctgttagctttggaagtgctgtgcaaattgcctgac tgtgatcagatcgatgatgataacgacggcattactgttgaagtgaaacaacaaaacaac aacagcgatgatcataccaatgctactgttactgctactactactactaataataataat aataatggggggaatgaaaatcatagtttggatcaagtgtggcaatttggtgatcaagcg gattatttgctcaacagacgggatgatgtcgatgagttgaaattcgactggaatgatgaa aataattcaaacgtggcagaagaggaggaggaggaagaggagcagcaacagcagcagcag caggttttggaaacgaaacaaacgtcgtccagtggtgaaccagcgatggacatgtttgcc cagacgttgaaatttattgcctgcatgaaaatgctgaccgaagagttggcaaatttgatc agcggtttcgaattggatattggccagatgcgcgatcagttgtacaaatggttggaaaat gaagtggacgtgctgaaattggtctgcgattacagggtcaacgtgaatcggtgcggttca cctccgctaccggtagttgaagttacctacggccaaggttcgccgacgcaattgcacgaa gcgattcaccacgaccgagccgaactggccgaacgatggcagcgtaccatcaaacgtcac cggtggttggttgctcatcaacaagtgctcagaacacttgcctacttttgttcactgcat tgttcaaggtcgcctggcttggccgcatcccgcatggaattgttgctgctgatacaggag ttgacacaaaatttgtccagatccaagctgacggttcgtatgccactgtttgccagcttt ccgttgatgtcagcagcacttggttcgattaaaagtgcagttgcgttgccattgcgttac attctatcacagacttcggacattctgattacattgtcagaattgcagaatccacctaca ttccaacaacctgttcaagagatccaccttttgtacaatttatgtcagtgcttgtcgtct agtgtattctgttcgctgtgtgatttgggtgaaattatcaattcgaaagatgaatttctg actgaaagtaacagttacctccagcggaatatatttcgacgaaattctgcatatcagcaa aatccgatccaagttacatccaaaccttctcagtggcctggcatagatttgtcttccagt tttttgaccactgatcgtgacgaggacgtgccaaatttgctaattttgctcgtggagacg tggacatcgatttacttgtcactgtttgcgtactgtatgtacgcgtatgattcgcgttgg ctttaccgacttatggcgcatccggtcaacgagagtctttttgcgaccgtttttggcgga agcggtgaacgtcagttgttggtcgacactttaaattccactgtgcaaaataaaggctct tgctcttcaggttcatcagatggttcttattcgaaaaatgacaccgaaggaacaatggaa caacttgattcagcaaagttgcgcgcaaaatttcactacaaagttttcggcaaatccgct agcaatccaagtcaggcgacgactggtcaccggttggtgtcgtcgaggttggaatgggta cagccgaaaaagagcatcatcgcttattacacgtcaaaaccaccgttgttgatggaagaa gaggaacaatttggctacgattcagatgacagtgaacaaaattcagaaagtgaatccgaa aacgaagacgcggatgaatcgacttacgaatctcgagctgaagaagaatccaaagagcat tcgaatccgaacagctattcgtggcaaataattcgtctcgctttggtccgacaagctacc catcgggtgaggcaatttctcgccgtcgctggtatcgattgttcagaacttggaagcact agtccattggtatacagttgtttgaaaatgctcaattgttggacgaacatattgaccaat cagttgaacaatttccctggtggatgtccggatcattttttaccatcgtcagatttgcac gacctcactggcggtccggcgcttcataaatatcgtacaattttggaaccacagaacacc ccatttcgaggtaattcacgatctgtacttcccgtgcgcagactctggctttacctggtt cgtcaagaacatcttatggacgtagatgaatcgaatggtgtaagtccagatgtgaatatt ttgcccgaagcgttcaaagtggtacaacgtgagcacgatccaatcaatgcgtttgtcatc catccgaatcgtttcggtttggttgctgtaagttcaggtcgtgaactgcaagaaatggac gtttcagcattgttttcaccaacgatcgattggatccaagagcaaaccgatttggactta gtcatggctggcatgaaaaaaaatccactgattgacaacgacgattatttgctaatcact ccacaagaacgacgcgatggcactttagtaactggtcgaggaacaacttatttgacgcct ttcattgtggatcgcagtcgatatgctttgaggaaggcaatcgccaacgaatctgtagct agattggaacgttatttcggcgaatctttgccacccgtcgtctttgcaaacgtcatgttc ctggagtacgacgacttgaagcacacccgacacttccattctgtacgtaatttgtctgga gcgaatgacggttcggtgcgtttgtgggaatggggcgtcggtcagccgttgtacactcct cgtgttggtggaaggttcggcaaagtgacacagacgcgattctgcgctcagggtaacaaa aatatgaaatgtcattcgaaaatatgcaacgattttgtcttcttgggtcagtcgagcagt ttgctagcgaccgccggacaagggtcagttgacgcagcgatttccctgtgggatactctt ctaccgccaaatcgttacaacgtccacacttggaattgtcacacggatgtgacgaattgc cttctgcacgtgccaaatcaacaaacactactctgcggcggcaagcacggcgatttgcac gtttgggatgttcgtcaacgtcagctgcggttgacggtgaaacttttcgactcttccggc gtacggtctttggccatggatccaacgttcacattttttgccgccggatcaaccgatggt gatattaaggtgtacaatttgaatccgaatccacagttggtatttcattttccgcacgag cacagcaaccgtagtacgttcagcttgaggcaggttggcagtgcgaatcaaatacacggc gtgcagatgatgtacattgaccaacagcaacgtctctattcgtgcggtgccgattgctca ttcaaattgcgcgtactgccgcccattttttga

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