Trichinella spiralis: Tsp_09154
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Entry
Tsp_09154 CDS
T01609
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_09154
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_09154
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
90S particles
Helicases
Tsp_09154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PhoH
Motif
Other DBs
NCBI-GeneID:
10902963
NCBI-ProteinID:
XP_003382315
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MRRLETASVLRVQQNAQNPSLLILGPIRPIIFNDILYIGARKFFRRFIIMQKSAFSCLGF
GAKFDRKRFRADAEKLRLTKCSVADSSVKNGSKQDKNSNNDSEEKISNLLETDGVKIFEK
SAKRTSSLLLPNDENKILSETVDTVFPKSSSKEQSVQEVRRKHRIFVFGDDIPPPCCSFE
ELYALLVPKLVQNVKALNFCAPTPIQMQAIPVLLAVKGREVMASAPTGSGKTLAFLIPAV
NFLLTECESENILRILIIEPTYELSKQVYLELLKLTDGLNVKVHLTSNAPQLEDENNFDK
ENFDIMVTTPNRLIYAQQQSQPLYNLNTIRWLIIDECDKLFESGDRGFRKQQCDTVKIRR
LLFSATFSYELEQWCKINLNDMVMVCVGARNSAVQSVKQELVFVGSEHGKVLALRNMFIE
GFTPPVLIFVQSKDRAEQLYNEFKFDEVKIDYIHSDLPKKERENTIKKFRRGDTWILICT
ELIGRGLDFKCVNLVINFDFPTSSISYIHRIGKVVCSVMPARRLYFLGRTGRAGRQGRAL
TFFTETDKLLLRSIGNIIQAAGCPVPDYILKLPKASKKVRMTIASSAPKRDPISEVGSRR
NDRYQTKSIIGETKFFNLAKQRLAAAM
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgcttggaaactgcttctgtactaagagtacaacagaacgctcaaaatccatca
ttattaattttggggccaatccggccaattatctttaatgatatcctttacataggtgca
cggaaattttttcgtcgttttattattatgcaaaaaagtgcattttcttgtcttggattc
ggagcaaaattcgatcggaagcgttttcgagctgatgctgaaaaacttcgccttacaaag
tgctctgttgctgattcttctgtcaaaaatggtagcaaacaagataaaaattcaaataat
gattcggaagaaaaaatctcgaatcttttggaaactgatggggtgaagatttttgaaaaa
tctgcaaagcgcacatcaagtttgttattgcctaatgatgaaaacaaaattttgtctgaa
actgtggatactgtttttccaaaaagcagttcgaaagaacagtctgtgcaagaagttcgt
agaaaacatagaatttttgtatttggtgatgacataccaccaccatgttgttcttttgaa
gaactgtatgcattgctggttccaaaacttgtgcaaaatgttaaagcattgaatttttgt
gctccaactccaatacaaatgcaagcgattcccgttctacttgctgtaaaaggtcgtgag
gttatggccagcgcacccactggttctggaaaaactttagcatttcttattccggctgta
aattttttactgacagaatgtgaaagtgaaaatattttacgcattttgatcattgaacct
acatatgaattatcaaaacaagtttatctagagttgcttaaactgactgacggattgaac
gtgaaagttcatttaacgagcaatgcacctcagcttgaagatgaaaataattttgataaa
gaaaattttgatattatggttaccactccaaatcgtttaatatatgctcaacaacagtca
cagccattgtacaatttgaatactatcagatggttaataatagatgaatgtgataaattg
tttgaatctggtgaccgtggttttcgaaagcagcagtgtgatactgtcaagattcgacga
ctgttattcagcgcaactttttcttatgaattggagcagtggtgcaaaataaatctgaat
gacatggtcatggtttgcgttggtgcaagaaattctgccgtacaaagtgtcaaacaagag
ttagtttttgtcggctctgaacatggcaaagtattggcgttgcgcaatatgtttatagaa
ggctttactccacccgttttgatatttgtacaaagcaaagatcgagctgagcagttatat
aatgaattcaaatttgacgaagtgaaaattgattacatccactctgatcttccaaagaaa
gagcgtgaaaacactattaaaaaatttcgacgtggtgacacatggattttgatatgtaca
gaattgattggtcgtggtttggatttcaaatgcgttaatttggttataaattttgatttt
cctacttcgtcaattagttatattcatcgtattggtaaagttgtttgttctgtcatgcct
gcgcgaagattatactttttaggacgcacgggaagagctggtcgtcaaggccgagctttg
acgttttttactgaaactgataaactgctactacgcagtattggaaatattattcaagct
gcagggtgtccagtgcctgattatattttgaaacttccaaaagcctcaaagaaagtgaga
atgactattgcatcttcagcccctaaacgagatccgatatctgaagtgggatctagaaga
aacgatcgatatcaaacaaaaagcattattggtgaaacaaaattctttaatttagcgaag
caacgacttgctgcagcaatgtaa
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