Trichinella spiralis: Tsp_09179
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Entry
Tsp_09179 CDS
T01609
Name
(RefSeq) eukaryotic initiation factor 4A
KO
K03257
translation initiation factor 4A
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_09179
03012 Translation factors [BR:
tsp03012
]
Tsp_09179
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsp04147
]
Tsp_09179
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Tsp_09179
mRNA cycle factors
Stress granule specific factors
Tsp_09179
Translation factors [BR:
tsp03012
]
Eukaryotic type
Initiation factors
eIF-4
Tsp_09179
Exosome [BR:
tsp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Tsp_09179
Exosomal proteins of bladder cancer cells
Tsp_09179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
NAT10_TcmA_helicase
AAA_30
AAA_19
fragilysinNterm
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-GeneID:
10904810
NCBI-ProteinID:
XP_003375599
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MASGERESEKKGNPAGQYQPVPFSGECANNTVGEANEPARGSGSYQSMHVGSETNNNEQR
EDGRHAAENLASQHNLETNYTEMVNSFEKMGLREELLRGVFAYGFEKPSVIQQLAIVPCC
QRRDVIAQAQSGTGKTATFAIGLLQQINTDFNDCQALVMAPTRELAQQIQKVILALGDHM
GVKVLTCIGGTSVATNREKLGQGCHVAVGTPGRVLDMIRGHHLQTKGIKTFVLDEADEML
SRGFKQQIHEVFEFMPADVQVVLLSATMPDEVLQVTTKFMNNPVRILVRKEELTLDGIRQ
FYIEVGREEWKLDTLCDIYTTLSISKAVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQ
QDRDVIMQQFRTGSSRVLISTDLLARGIDIQQVSIVINYDIPHNRENYIHRYEQPAVFIG
RSGRFGRVGVAINFVTENDKRMMKDIEEFYHTNIRQMPADIEKVR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaggagagcgcgaatcggaaaaaaaagggaaccccgccggtcaataccagccc
gtcccgtttagcggcgaatgcgccaataacacggtgggggaagcgaacgagcctgctcga
gggagcggctcgtaccagtcaatgcatgtcggttccgaaaccaacaacaacgaacaacgg
gaagatggtcgacatgcagctgagaacttagcttctcagcacaacttggaaactaattac
acggaaatggtgaacagttttgaaaagatgggcttacgagaagaactacttcgcggagtg
ttcgcgtatggtttcgaaaagccatccgttattcagcagctagctattgtaccgtgttgt
caacgtcgagatgtgattgcgcaagcgcaatctggaactggcaaaactgccacatttgcc
atcggcctactgcagcagataaacacagatttcaacgactgtcaggctttggtaatggca
ccaacgcgagaactggctcagcagatccagaaagttatccttgcacttggagaccacatg
ggcgtcaaggttcttacctgtatcggtggtacgagtgttgcaacaaacagagaaaaactt
gggcaaggctgtcacgttgcggtggggactcctggccgcgtgttggatatgattcgagga
catcatctccaaactaagggtataaagacgttcgttttggatgaagcagacgaaatgctc
tctcgtggttttaagcaacaaatacacgaggtttttgagtttatgcctgctgatgttcag
gttgttttgttgtctgccactatgccagacgaggtgcttcaagtgactaccaagtttatg
aataatccggttcggatattggttcgaaaagaggaactaacgttggatggtattcgtcag
ttttacattgaagttggtcgcgaagaatggaaattagatacattgtgtgacatctacact
actttaagcatcagcaaggctgttatcttttgtaactctcgccagaaggtggaaaaatta
gctcgcgaattgactgatcgcaaatttactgtgacttgcatgcatggtgacatgactcag
caagatcgggacgtgatcatgcaacagtttcgtactggatctagtcgtgtgttgatttcc
acggatttgttggcgcgtggtattgatatccagcaggtttcgattgtgattaattacgat
attccgcacaatcgagaaaattacattcatcggtatgagcagccagcagtattcattggt
cgtagcggacgattcggtcgcgtgggagtggcgatcaattttgttactgaaaacgataaa
cgaatgatgaaagacattgaggaattttaccacaccaatattcgccagatgccggcggat
attgaaaaggtccgttag
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