Trichinella spiralis: Tsp_09354
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Entry
Tsp_09354 CDS
T01609
Name
(RefSeq) DEAD-box helicase 1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
tsp03015
mRNA surveillance pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_09354
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_09354
03015 mRNA surveillance pathway
Tsp_09354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_09354
03041 Spliceosome [BR:
tsp03041
]
Tsp_09354
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_09354
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Tsp_09354
Spliceosome [BR:
tsp03041
]
Complex C
Other components
EJC/TREX
Tsp_09354
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Tsp_09354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RNase_PH
ResIII
CMS1
Cas3-like_C_2
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
10905314
NCBI-ProteinID:
XP_003375777
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MATLGHEELLDYEDEQEETVQHSKIADIQTDHHLEVVGGKKPVKGAYASIHSSGFRDFLL
KPELLRSIVDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVIATLQQLNAVEG
EVHCLVMCHTRELAFQISKEYERFCKYMPKVKVAVFFGGTNVKKDEDMLRNNTPHIVVGT
PGRLLALARNRVLSLKSIKYFILDECDRMLGDLDMRRDVQEIYKMTPREKQVMMFSATLS
KELRPVCKKFMQDPMEVYVDDEAKLTLHGLQQYYVKLKETEKNKKLFELLDVLEFNQVVI
FVRSVQRCMALNELLTEQNFPSIAIHRSMAQEERLSRYQQFRDFHKRILVATNLFGRGMD
IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDAKVLNDVQDRFDVSIG
ELPDELDLKIVENWRRNFDALPNHRNRSYSRMLKKPAVIIETVVKKSHRSANGNKLICNS
SDVKREKKMSNNVTELEAEFRCTVRYVEDCTGSCLVSKRGTTLLISVHGPTDVKASKQLP
DSAVVQVHLTTVSKDEIGGRSSIDSGQMTLFLQNICQSIILVKLLPKRLITIVVQELESD
GCFMEVAVNGLCIALLESALPMNDMFAASTLAYYGGASGQILLNPTAKEETEADCVLCCV
YLDHVVENVFSIWTKGNMPLSMLDQVLSQAETQSRQILTFIRQLFTDIFIQQTL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggctactctgggtcatgaagaacttctagattatgaagatgaacaagaagaaacagta
caacacagtaaaatagctgacatccaaacagatcaccatttagaagttgtaggtggaaag
aagcctgtaaagggcgcttatgcatcgatacatagttctggctttcgagattttttgcta
aagcctgaacttttgcgttccatcgttgactgcggtttcgagcatccttcggaagtgcaa
catgagtgcattcctcaagccattttgggaatggatgttgtttgtcaagccaagtctggt
atgggcaaaactgcagtttttgtaattgcgacgttgcagcagttaaatgcagtcgaaggc
gaagttcactgtttagtgatgtgtcatacacgtgaactcgcgtttcaaattagcaaggaa
tacgaaagattttgcaagtatatgcccaaagtgaaagtggctgttttttttggaggaacg
aatgttaaaaaagacgaagatatgcttcgaaacaacactccgcatattgtagttggcact
cctggtcgtcttctggccttagctcgcaatcgcgttttatcattgaaatccataaaatat
tttatacttgatgaatgcgatcgcatgttgggagatctggatatgcggcgagatgtccaa
gaaatatacaaaatgacacctcgtgaaaagcaagttatgatgttttctgcaactctgagc
aaagaactgcgtcctgtttgcaaaaaattcatgcaagatccaatggaagtttatgttgac
gatgaagcgaaactgaccttgcatggtttgcagcagtattacgttaaactaaaagaaact
gaaaaaaataaaaagttatttgagttgctagacgttcttgaatttaatcaagttgttatt
tttgttcgatcagtgcagcgttgcatggctttgaacgaattgttgaccgagcagaatttt
cccagcatcgctatacatcgttctatggcccaagaggagaggctctcgcgatatcaacag
tttagagattttcacaaacgaatcttggtagcaacgaatttatttggaagaggaatggac
attgaacgtgtgaatatcgtcttcaattacgacatgccagaagactcggacacatattta
catcgcgtagcaagagctggtcgtttcggcaccaaaggtttggcaataacatttgtgagt
gatgaatcggatgcgaaagtgctgaacgatgttcaagaccgttttgacgtcagcattggc
gaacttcctgacgaattggacttgaagatcgttgaaaattggcgaagaaatttcgacgca
ttacctaatcaccgaaaccgtagttattctcgcatgttaaaaaaaccagccgtaattatc
gaaacagttgttaaaaaatcacacagatcagcgaatggtaataagttgatttgtaattca
tcagacgtaaaaagagaaaaaaagatgtcaaataacgtgactgaattggaggcagaattt
cgttgcacagttcgctacgttgaagattgtactggatcgtgtttagtcagtaaacgggga
acaactttgttgatcagtgttcacggcccgaccgatgtgaaagcttcgaaacagcttcca
gattcagcagtggtccaagtgcatttgacgacagtatccaaagatgaaattggtggtcga
agctcgatcgacagtggtcaaatgacgttgttcttgcagaatatttgccagtcgataatt
ttggtcaagctgttgccgaagcgactgatcaccatcgtggtgcaagaattggaaagcgat
ggctgctttatggaagtggcggtcaacggtctgtgcatagctttgttggagtcggcgttg
ccgatgaacgacatgttcgccgcaagcacgttggcttattacggcggtgctagtgggcaa
attttgctcaatccaaccgccaaagaggaaaccgaagccgactgtgttctctgttgcgtc
tatttggaccatgtggtggaaaatgtattctccatctggaccaaaggcaacatgccgttg
tctatgttggaccaagttttatcccaagccgagacacaatctcgtcaaatccttacattc
ataagacaactctttacggatatttttatccaacaaacactttaa
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