Trichinella spiralis: Tsp_09358
Help
Entry
Tsp_09358 CDS
T01609
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
tsp
Trichinella spiralis
Pathway
tsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Tsp_09358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_09358
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
Tsp_09358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ATP-cone
AAA_29
Motif
Other DBs
NCBI-GeneID:
10905318
NCBI-ProteinID:
XP_003375781
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MSKNGQKRRLVIIESDSECESETNIAKTNEPANEKGSPVSPVFPVGKFYELYHMDAVVGV
KNLNLSFMKGDYAHCGFPEVSFDRFSDQLIEHGFKVARVEQTETPEMLQKRAHQELLPSK
EKVIRREICRIITRGTKTYNFLETEDDNVQISQFEDDCDYSQLRTVLASYPPVQILFPRG
QLSPQMLNMFKYNLNNVDKEALIPKVEFWTAADTLRNLALDCYFGVDDRGNVDWPEALAT
CIDQQDLFQQTPKPQYALGISSFGAIVWYLKECLIDHDILRLKNFELYSPPATVEFGKLS
SCHQPLKNRYMVLNDITLRNLDIVNFERKKSTKVTVYDEINLCKTAMGKRLLHFWLCNPL
CDLQEIEQRQVAVRNLIEQTELFESLIKQLREIPDLERLLQKMSSGLFRSRHVQQTQSSR
FCPINQRLCQSQQANANCLQFCITNPVQTTTQHFVGMFDGMFLSSSSLLQALFIRKGGAK
CFPDIQSDVQYFQNAFDHETAKTIGSIIPEEGVDPALDAANQAIVHAEKQLDNYLKTIQK
RLNCSGFKRYTTKELDDLVKLLAASEADREVALKDIMRRLFANFCERKVKWYAAVENIAT
LDVLLAFAQYAKCCTREVCCPKFIDAIDGKTFLRLDESVHPCCGKIKTQGDYIANDVLIG
SSESDTGQVLLLTGANMGGKSTLMRQVGTLIVLAQIGSYVPARNFTLSPVDCIFTRIGAR
DSLITGQSTLFVELRETSAILKHATIHSFVIIDELGRGTSTWDGTAIAHATLQYITNHIG
CRTIFSTHYHSLMDSLAANPRIRLGHMACMVENESEGADPTEENVVFLYKLAPGACPKSY
GFNAAKLAGIHVDVIKKAYAKSMYFARMEKERVSQVKEAENAKV
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaacggtcaaaagcgtcgcctggtgataattgaaagcgattctgaatgtgaa
tcagaaactaacattgccaaaaccaacgaaccagccaatgaaaaaggatctcctgtctca
ccggtctttccggtgggaaagttttacgaactttatcacatggatgctgttgttggagtg
aaaaatttaaatttatccttcatgaagggtgactacgcccactgtggctttcctgaagtg
tcatttgatcgtttcagcgatcagctgattgaacatggattcaaagttgctcgtgtcgaa
caaactgaaactcctgaaatgttacagaaaagagctcatcaagaactcttaccttcgaaa
gaaaaagtgattcgtcgagaaatttgtcgcatcattacacgtggaacaaaaacgtacaac
tttctagaaaccgaagatgacaatgtccaaataagtcaatttgaagacgactgcgattat
tcacaattgcgaacagttcttgcctcttatcctccggttcagatattatttccacgtggc
caattgtctccacagatgttgaatatgttcaagtacaatttgaacaatgttgacaaagag
gctttgataccgaaagtggaattttggaccgccgccgatactcttcgtaatttagcactg
gattgctattttggagtcgacgatcgaggaaatgtcgactggcccgaagcacttgcaact
tgcattgatcagcaagatctatttcaacaaacccccaagccacagtacgctcttggcatc
agttcgttcggtgcaatcgtttggtatttgaaagaatgtctaattgatcatgatatttta
agattgaaaaattttgaactttattcacctccagcgactgtggaatttgggaaactttca
tcttgtcatcagcctttgaaaaatcgttacatggtattgaatgatatcactttgagaaat
ttggatattgtgaattttgaaagaaaaaaatccaccaaagtgactgtttatgatgaaata
aatttgtgcaaaactgcaatgggaaaacgacttttgcatttttggttgtgcaatccgctt
tgtgatttgcaagaaattgaacagcgtcaagtggctgttcgcaatttgatcgaacaaaca
gaattgttcgaaagtttgatcaaacagttgcgtgaaattccggatttggaacgccttttg
caaaaaatgtcgagcggtttatttcgaagccgacacgtacagcaaacgcaaagtagccga
ttttgtccaattaatcagcggctttgccaaagccaacaagctaatgcaaactgtttgcaa
ttttgcatcacaaatccagtacaaacgacaactcagcattttgttggaatgtttgatgga
atgtttctttctagctcgtcacttttgcaagcacttttcattcgaaaaggtggcgccaaa
tgttttcctgacattcaatccgatgtacaatattttcaaaatgcattcgaccacgagacg
gcgaaaacaatcggctcgattattcctgaagagggcgttgatccggcattggatgcagcc
aatcaagcaattgttcatgctgagaagcaattggacaattatttgaaaactattcaaaag
cgtcttaattgttcgggcttcaaaaggtacacgacaaaagaactggacgacttggtgaaa
ctgcttgctgcaagcgaagcggatcgagaagtcgctttgaaagatatcatgcgtcgtttg
tttgcaaatttttgtgaacggaaagtgaaatggtatgctgcggttgaaaacattgccact
ttggacgttttgctagccttcgcgcagtacgcgaaatgttgtacacgcgaagtttgttgt
ccaaaatttatcgatgctatcgacggtaagactttccttcggttagatgaatctgtacat
ccgtgttgtggaaaaatcaaaacacagggcgactatattgcaaatgatgtattgattggc
tcttctgaatcggatacaggacaagtgcttttgcttacaggggcgaatatgggcggaaaa
tcgaccctgatgcgtcaagtgggcactttgatcgtgcttgcccaaattggttcctacgta
cctgcacgcaattttaccttgtcgccggtggactgcatttttacccgcattggtgcccgt
gattcactgattaccggacaaagtacactttttgtggaacttcgtgaaaccagtgccatt
ttaaaacatgccactattcactcatttgttattatcgacgaattgggccgaggcacgtct
acatgggacggaactgccattgcccatgctactcttcaatatataactaatcacattggt
tgtcgtacaatcttttccacgcattatcattcgttaatggatagtctggcagcgaaccca
agaattcgtctcggacatatggcttgtatggtggagaatgaaagtgaaggggctgatcca
actgaagagaatgtggtttttttgtacaaactcgcgcccggggcatgtccgaaaagttac
ggcttcaacgcagccaagcttgcaggaatccatgtcgatgttataaaaaaggcttacgca
aagagcatgtattttgcacggatggaaaaagaacgagtttcccaagtcaaagaagctgaa
aatgcaaaagtataa
DBGET
integrated database retrieval system
