Trichinella spiralis: Tsp_09640
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Entry
Tsp_09640 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K25178
coiled-coil domain-containing protein 174
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_09640
03041 Spliceosome [BR:
tsp03041
]
Tsp_09640
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Tsp_09640
Spliceosome [BR:
tsp03041
]
Complex C
Other components
EJC/TREX
Tsp_09640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4078
DPPIV_N
Motif
Other DBs
NCBI-GeneID:
10898096
NCBI-ProteinID:
XP_003374281
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MNNYENCKEIFLLVSRKCVKKRLPTEIFEIVFSLVNSERAVFQCNLLCTAQCRIVQHLVK
ISPGGSSSTVLKQHRCKLSCKDLQHRVRSLKITESGTVVTGCIGVCELERMRDLGSSDVI
PARLYLFLSLHLHVPQLAPSLNIVCDSTVLFRFALRSEVNLNQIAVSLSRNIIVFREMSG
TMKPSVSTLFDLKAELHKRKELLAKKKDSNQYNASDLYVKGKPILAERRRLMKEANTSKA
AKKNLSDPEIFERERQLMQSKQKLQEKAALYEQLKAGIKKDKEFIWVGRWHRITVCYSIC
NKERLLDEPDVYNETTYLVNFEQKDKLQSSSDSEVSDEESSLSSKKSFEASKLGDEWVEY
TDFAGRNRVCLKKDLPKMKAIDDKNSLRSQHGVSWNSETELMSKDMKRELQRQKWENEVT
SSTGAAPVHYQHVLGNEPIVHGASYYEFSLDEQKRQEQMKMLDEARQQTLIHRAKNERIR
EKRKLLLKARLEKVAERRQIGSFPELFPNMTEDEKNVDDIPMPDDAPDEQKAEDEERAKR
RAIHVRPWDEIKKKRTSWIEERREERDPEFAPPNLEHRTEENAPKMDEETSKQRKEYSFP
ELLELSHLYRMEVDLRDWYFRTHYLTFRSFIERLDHQDAIDHLPKLENSPHLPNDRIFRL
YSFGFLERELGSRLLYTDIVVDRNCKLRSVGPPFWKTLCNTYVRIVRRHPPTDDSRDHII
QYPLDFNMCKFSRHVASNSFYYSQESRLMRLVDEVPLDKRRIQCLVNIDPLVPENITVCP
GNERLFAFVADRNVHVSTGAVPVTLEHSPSRQSWSYGLPPYIIREEFNRQEGFWWSPTSN
GNEYFLLVEGYNDKMLPSILLSDYTMSPDKFECLPYAFAGEQADYLNLLLLYCAIDLGGL
NPKWCVKVYSVEVWERNFPERLIKLVPWAEYLVNAGWLPDGSA
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaacaactatgaaaactgcaaagaaatatttctacttgtatctagaaaatgtgtgaaa
aaaagattaccaactgaaatatttgaaattgttttctcacttgtcaacagtgaacgtgca
gtatttcagtgtaacttgctgtgtacagcgcagtgcagaattgtccaacacttggtaaaa
atttcacccggtggctcatcaagcacagttttaaaacagcaccgttgcaagttaagttgc
aaggatttgcagcaccgagttcgatcattgaagatcactgaatcaggtacggtagttacc
ggatgtataggagtttgtgagttggagcgaatgcgtgatctggggagtagtgacgtcatc
cctgcccgtttgtacctgttcctcagcttgcaccttcatgttccccagcttgcaccttca
ctgaatatagtgtgtgattccaccgttttgtttcgttttgcattacgttcagaagtgaac
ctgaaccagattgcggttagtctttcaagaaatataatcgtcttcagggaaatgtctggt
acaatgaagcctagcgtttcaacgctctttgatttgaaagctgaattgcacaaaagaaag
gaacttctagcgaagaaaaaagattctaatcaatataatgcatctgatttgtacgtgaaa
ggaaagccaatattggcagaacgacgccggttgatgaaggaagccaatacgtctaaagct
gcgaaaaagaatttatctgatccagaaatatttgaaagggaacgacagttgatgcagtct
aagcagaaattgcaagagaaagcagcactttacgaacagttgaaggcaggaattaagaag
gacaaagaatttatatgggtggggcgatggcatcgtattacagtatgctatagtatttgc
aataaagaaagattgttagatgaacctgatgtatacaacgaaacaacgtatctggttaat
tttgagcagaaagataagttacagtcctcatcggatagcgaagtatccgacgaagaaagc
tctttgtcaagcaagaaatcttttgaagcatcaaaacttggtgatgaatgggtggagtac
actgattttgctggaaggaatcgcgtttgtttaaagaaagatttgccgaagatgaaagca
atagacgataaaaattctttgcgatctcagcacggtgtttcttggaattcggaaacggaa
ctgatgtctaaagatatgaaacgagagctgcaaaggcaaaaatgggaaaatgaagttacc
tcttcaactggtgcggctcctgttcactatcagcatgttcttggaaacgaacccattgta
catggtgcatcatactatgaattttcacttgatgaacaaaaacgtcaggaacaaatgaaa
atgttagacgaagctcgtcagcagactttgatacatcgagcgaaaaatgaaagaatacgg
gagaaaagaaagttgcttttgaaagctcgacttgaaaaagttgcagagagacgtcaaatt
ggttcatttccagagcttttcccaaacatgacagaagatgagaagaacgtcgatgatatt
ccaatgccggatgatgctcccgatgaacagaaagccgaagatgaagaacgggctaaaagg
cgggcaatccacgttcgaccatgggatgaaatcaagaagaaaaggacaagttggatagaa
gaacgtagagaagaacgcgatccagaatttgctccacctaatttggaacaccgaacggaa
gagaacgcaccgaagatggacgaggaaacatcaaagcagagaaaagagtacagttttcca
gagctgttggaattatcgcacctgtaccgcatggaggtggacctgcgcgattggtacttt
cgcacgcactacttgacgttccgcagcttcatcgaaaggcttgaccaccaggacgccatt
gaccatctgcccaaattggaaaattcccctcacctgccgaacgatcgcattttccgtttg
tacagcttcggcttcttggaacgcgaactgggcagtcgactgctgtacaccgacatcgtg
gtcgacaggaactgcaagctacggtcagttggtccaccattctggaagacgctctgcaat
acttacgttcgtattgtccggcggcatccgcccacagacgacagtcgtgatcacattatt
cagtatccgttggatttcaacatgtgcaaattttcccgtcacgttgccagcaattcgttc
tattattctcaggaaagccgtctgatgcgactagttgatgaagtaccgctggacaaacga
cgaattcagtgtcttgtcaatattgatcctctcgttccggaaaatataactgtatgtcct
ggcaatgaaaggcttttcgcgtttgtggccgacagaaatgtccacgtttctactggagcg
gtgcccgtcacattggaacattctccgtcacgtcaaagttggtcttacggtcttccacct
tatataatacgagaagaattcaatcgacaggaaggattctggtggtccccaacttcgaat
ggcaatgaatattttttgcttgttgaaggatacaacgataaaatgttgccaagtattcta
ctttctgattacacgatgagccctgataaattcgagtgtctcccttacgcttttgctggt
gagcaagcagattatttgaatctcttgttgctatattgtgcaattgatttaggaggtctg
aatcccaagtggtgcgtgaaagtgtattcggtcgaagtgtgggagcgtaattttccagaa
cgactgatcaaattggttccttgggcggaatatttggtgaatgccggctggttgccagac
ggaagcgcgtaa
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