Trichinella spiralis: Tsp_09659
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Entry
Tsp_09659 CDS
T01609
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tsp
Trichinella spiralis
Pathway
tsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Tsp_09659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_09659
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
Tsp_09659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
Homeodomain
MutS_III
Lipase_2
Homeobox_KN
MutS_IV
GAIN_A
Motif
Other DBs
NCBI-GeneID:
10898232
NCBI-ProteinID:
XP_003374334
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MKVSDSTLQCFAGLIKYFGLVNDDCFLKQFQIQYFTPEKHLRVEWSTFESLNLFRFGEKQ
KEWISDERLDIVDLFVQNGEIRNILQQELLCRFPDLHRLCRKFVIKRAGLPEVYKVYSAV
NCASDMLKLLDKMNTSVIKDNFTEPLLITLDDFRKLTEMVSMTLDLDCIARTGEYRVKPE
FSQFLQDLNNCMQNIDQKMTSYLTKDEKIIRNQKTVELLDMQKGSVRFTDEILKNMNSEM
MKAKESYEEFQKRIVDELVATVATYMDPMKSLAQVVGHLDVMVSFAVASVNAPVQYTAMI
IIMAQMGCFVPCQEATISILDAVYTRIGASDNQYKGLSTFMTEMVEVSEILELPSENSLI
VIDELGRGTSTFDGLGIAWAVAETIATKVRAFCLFASHFYEMTMMASELLTVKNYQALAT
FADSNLVLLYKIKPGQHRDCRSVLPINSVVVFVKKVVLALSFDNIGCMFRIANLLNLNEQ
TRNSPANSKITVQLPDSVDHATKAKATNPGVVEPCPLPVVFFSVSNESMRWPLRTCPVDE
TLWRRENTYNGLYWTPFNSVSPVFCGSSRCMKQRRPRTSFTSQQLVELESKFKEFKYLSR
PQRYEIATALSLSENQVKIWFQNRRMKWKRYRMAEREKEKEANFCKNHGTSKVTCDTS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgtccgattcgactttgcaatgctttgccggattaatcaaatatttcggattg
gtgaacgatgattgttttctcaagcagtttcaaatccaatacttcacccctgagaagcac
cttcgtgtcgaatggtccacttttgagagtttgaatttgttccgatttggtgaaaagcaa
aaagaatggatttcagacgaacgactggatattgtcgatttgtttgttcagaatggtgaa
atacggaacatcctgcaacaggagttgctgtgccgtttcccggatctgcatcgcctgtgc
agaaagtttgtcatcaagcgagctggtctaccggaagtttacaaagtttacagcgcggtg
aactgcgcatccgatatgttgaaactgttggacaagatgaatacttctgtaattaaggac
aatttcaccgaaccccttttgattacgttggacgattttcgaaaactcacggaaatggtg
tccatgactttggatcttgactgtattgccagaactggagaataccgagtgaaaccagag
tttagtcaatttttgcaagatttgaataattgtatgcaaaatattgaccaaaagatgact
tcttatttgacgaaggatgaaaagatcattcgcaatcaaaagactgtggaattgttggat
atgcagaaaggatccgtacgattcaccgatgaaattttgaagaacatgaattcagaaatg
atgaaagccaaagaaagctacgaagaatttcaaaaaagaattgttgatgagttggtcgcc
actgtggccacttatatggatcctatgaaatcactggcacaagttgttggtcatttggac
gtgatggtctcgtttgccgttgcttcggtcaatgcacccgttcagtataccgcgatgatt
atcatcatggctcagatgggttgctttgttccttgtcaagaagcgactatcagtattttg
gacgcagtatatacacgaattggtgcatcggacaatcagtacaaagggttatcaacattc
atgactgaaatggtagaagtatctgaaatactggaacttccgtctgaaaattctctgatt
gtcattgatgaattaggtaggggaacgtctaccttcgacggattgggtattgcttgggct
gtggctgaaacaatagcgacaaaagtgagagcgttttgcttgtttgcaagccacttttac
gagatgacgatgatggcatccgaactgctcacggttaagaattatcaagcattggcgaca
tttgctgacagcaatctcgtactgttgtacaagatcaaacctggtcagcatcgtgattgt
cgttcagttttgccaattaattctgttgttgtttttgtgaaaaaggttgttctcgcattg
tctttcgataatatcggttgtatgtttcgaatagcaaatttgttgaatttgaacgaacag
acccgaaactcaccggctaatagtaaaattacagtccaactgccggattctgtagatcac
gcgacaaaagcaaaggcgacgaacccgggtgtggtggaaccctgccctttgccggttgta
tttttcagtgtttccaatgaaagtatgcgatggcctttgcgtacatgcccggttgatgaa
acgctatggagacgagagaacacgtacaacggtctgtactggacgccgttcaattctgta
tcacctgttttttgcggatcttcaagatgtatgaaacaacgaagacctagaacatcattt
acaagtcagcagctggttgaattggagagcaagttcaaagaattcaaatatttgtctaga
ccgcagcggtatgaaattgcaaccgcgttgtcgctgagtgaaaatcaggtcaaaatttgg
ttccaaaatcggcgaatgaaatggaaaagatatcgcatggcggagagagagaaagaaaaa
gaagccaatttctgcaaaaaccacggaacatctaaagtgacttgtgatacttcataa
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