Trichinella spiralis: Tsp_09661
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Entry
Tsp_09661 CDS
T01609
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03020
RNA polymerase
tsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tsp_09661
09124 Replication and repair
03420 Nucleotide excision repair
Tsp_09661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_09661
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_09661
Enzymes [BR:
tsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tsp_09661
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
Tsp_09661
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Tsp_09661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5816
Motif
Other DBs
NCBI-GeneID:
10898230
NCBI-ProteinID:
XP_003374332
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MFGDESSDDEILASSPPTSPYLHSGSKPSESVNGYSNDISSEMWQEACWVVISAYFDEKG
LVRQQLDSFDEFIQMSVQKLVEDSPPVEIQLEDHGAQGLSETKFSIKFEQIYLSKPTHWE
KDGAPAPLMPNEARLRNLTYSAPLYVDITKTIAKSNEEPLIAKYEKVFIGKIPIMLRSTY
CLLNRLSERDLTDLNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSLKDNKFAFKAE
CRSCLESSSRPTSTLWVNMYARGGGHGAANTKKQLMGQRIVVNLPYVKQELPVIVVFRAL
GFVSDRDILEHIVYDFDDAEMMEMVKPSLDEAFVIQEQSVALNFIGSRGVQPGITREKRV
KYAREILQKETLPHVGISDFCETKKAYFLGYMVHRLLLAAMGRRELDDRDHYGNKRLDLA
GPLGLFKNLLKEVKMVAQRYINKTGDFNLELCVRTGILTKGLQYSLATGNWGDQKKAHQT
RAGVSQVLNRLTYAATLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGQAVGL
VKNLALMAYISVGSQQEPILEFLEEWSMETLEEVAPSAISATTKIFVNGAWVGIHREPQQ
LMATLRKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQRLLLKKNHIEN
LKRRNESNGHGWSELVANSIVEYIDTMEEETIMLAMTPDDLQDRGVGYCDTYTHCEIHPS
MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHVRMDTLAHVLWYPQKPLVTT
RSMEYLRFNELPAGINSIVAILSYTGYNQEDSVIMNSSSIDRGMFRSIFYRSYRDQESSR
EARNEETIEKPTRQICQGMRNAVYHKLDDDGIVSPGTRVSGDDVIIGKTIMLEDTDDSST
TKRSSKKDASTFLRASETGIVDQVMLSVNADGNKFVKVRVRSIRIPQIGDKFASRHGQKG
TIGMIYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANRGEIGDATPFN
DSVNVQKVSSLLQEYGYHLRGNEVMYSGFTGRKLNTQVFIGPTYYQRLKHMVDDKIHSRA
RGPLQMMARQPMEGRSRDGGLRFGEMERDCQIAHGAAHFLKERLFEVSDPYTVYVCKICG
IIAIANSRTGHYECRTCRNKTKISRVNIPYACKLLFQELTSMCIAPRMKT
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcgatgaaagttcagacgatgaaatactggccagttcacctccaacgtcacct
tatctccactcgggcagtaagccatcggaaagtgttaatggttattctaacgacatttcc
agcgaaatgtggcaagaggcgtgctgggttgtcatttcagcgtattttgatgagaaaggt
cttgtacgccagcagttggattcatttgatgagtttattcaaatgtctgtgcaaaaattg
gtcgaggattcacctccagttgaaatacagttagaagatcacggagcgcaaggactgagt
gagacgaaattttcgattaaatttgaacagatctatttgtcaaagccgacacattgggaa
aaagacggcgcaccagctccgctgatgccgaacgaagcacgcttgcgcaatctcacctat
tcggctcctttgtatgtggatattacgaaaacaatagccaaaagtaatgaagaaccactg
attgcaaaatatgagaaggtgtttattggaaaaataccaataatgcttcgttcgacttat
tgtttgctgaatcgtctgagtgagcgggatttgactgatttgaacgaatgtccattggat
ccgggcggctatttcatcatcaacggcagtgagaaggttttgattgcgcaggaaaaaatg
gctacgaatactgtatacgtgttcagtcttaaagataacaaatttgctttcaaagccgaa
tgtcgctcttgtttggagtccagcagccgtccaacgagcaccctttgggttaacatgtac
gctcggggcggtggtcatggagcggcgaacacgaagaaacaattgatgggacagcgaatt
gttgtcaacttgccgtacgtgaagcaggaacttcctgtaatagttgttttccgtgctttg
gggttcgtttccgatcgagatatactggaacacattgtctacgattttgacgatgcggaa
atgatggaaatggtgaagccgtctttggacgaggcgtttgttattcaagaacagtcagtg
gctttgaattttatcggttctcgcggtgttcaacctggcattaccagggaaaagcgtgtg
aaatacgcgagagaaatattacagaaagaaactttgccgcacgttggcataagtgacttt
tgcgagaccaagaaagcctactttttgggctatatggttcatcggctgttgttggccgcc
atgggacgcagggaactggacgatcgagatcattacggaaataagcgattagatttggcg
gggccgttagggctgtttaaaaatttactgaaggaagtgaaaatggtcgcccaacgatac
atcaacaaaacgggagatttcaatttggaattgtgcgttcgtactggcatccttaccaaa
ggcttgcaatattctttggcaactggaaattggggtgatcagaaaaaagcgcatcaaact
cgagcaggagtttctcaagtattgaatagactcacttacgcggcaacgttgagtcatctg
cgacgtctgaattcaccaattggacgcgaaggcaagctggccaagccgcgtcagttgcac
aacactttgtggggtatgatctgccctgccgaaactcccgaaggccaggcggtgggcttg
gtgaaaaatctagccttgatggcttacatttcggtcggctctcaacaggaaccgatattg
gaatttttggaagaatggtccatggaaacgttggaagaagtagcgccgtcggctatatcg
gcgacgacgaaaattttcgtcaacggtgcctgggtcggtatacaccgggaaccgcagcag
ttgatggccacgttgagaaagttgcgtcgacaaatggacattgtcgtctccgaagtgagc
atggtgcgcgacatccgcgacagagagatacgcatctacacggatgcgggtagaatttgt
cgaccgttgttgattgttgaagatcaacgacttttactgaaaaagaatcacattgaaaac
ttgaagcgacgtaacgaatcaaatggacacggttggtcggaactggttgccaacagtatt
gtagaatatatcgacacaatggaagaggagaccatcatgttggcaatgactcccgacgat
ttgcaggatcgtggagttggttattgcgacacatatacgcactgtgaaattcatccgagc
atgattttgggcgtttgtgcgagtattattccatttccggatcacaatcaaagtccaaga
aatacttaccagtctgcgatgggcaaacaggctatgggtatttacacgactaattttcac
gttcgcatggacacgctggctcatgtgctctggtatcctcagaaaccgttggtcactact
cgatcaatggaatatcttcgctttaacgaattaccagcagggatcaattcaattgtcgcc
atattatcttacactggttataatcaagaagattcagttattatgaattcgtcatcaatt
gaccgtggaatgtttcgctcgattttttaccgaagttaccgtgatcaggaaagtagccgt
gaagcacgtaacgaagaaacaatcgaaaagccaacacgccaaatttgccaaggaatgcgt
aacgctgtatatcataagttggacgatgatggcattgtttcaccgggaacgcgtgtttcc
ggtgatgacgttataattggtaaaacaatcatgctcgaagatacggacgacagttccaca
acaaaacgttcgtcgaaaaaagatgcttcgacattcttgcgtgccagtgaaactggcatt
gtcgatcaggtgatgttgtcagtgaatgcagacggcaacaagtttgtcaaagtacgagtg
cgttcgatccgtatcccgcagattggtgacaaatttgccagccgtcacggtcagaagggc
accattgggatgatatatcgtcaagaggacatgccattcacgtgcgaaggcatcacgcca
gacattataatcaatccacacgcaattcctagtcgaatgaccattggtcatttgatcgag
tgcttgcagggcaaagtatcggcaaatcgtggtgaaattggtgacgcaacgccgttcaat
gattctgtgaacgtgcaaaaggtgagctctttgcttcaagagtacggttaccatcttcga
ggaaacgaagtcatgtacagcggttttactggccgtaaactcaatactcaggttttcatc
ggaccaacgtattatcagcgattgaagcacatggtcgacgataagattcactcgcgtgct
cgaggaccactgcagatgatggccagacaaccgatggaaggacgatccagagatggtggt
ttgagatttggagaaatggagcgtgattgtcagattgcgcatggtgctgctcactttttg
aaagagagactgtttgaagtttccgatccgtacactgtgtatgtgtgcaaaatatgcgga
attatagccatcgcgaacagtcgaactgggcattatgaatgtcgcacttgtcgaaacaaa
acaaaaataagtcgcgtgaatatcccatatgcatgtaagctgctctttcaagaactcaca
tctatgtgcattgcccctagaatgaaaacgtga
DBGET
integrated database retrieval system
