Trichinella spiralis: Tsp_09779
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Entry
Tsp_09779 CDS
T01609
Name
(RefSeq) WD domain, G-beta repeat-containing domain protein
KO
K10752
histone-binding protein RBBP4
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
tsp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_09779
03083 Polycomb repressive complex
Tsp_09779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_09779
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
Tsp_09779
Histone modification proteins
HAT complexes
HATB complex
Tsp_09779
HDAC complexes
Sin3A-HDAC complex
Tsp_09779
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
Tsp_09779
PRC2.2
Tsp_09779
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
Tsp_09779
Heterochromatin formation proteins
Other heterochromatin formation proteins
Tsp_09779
Chromatin remodeling factors
NuRD complex
Tsp_09779
NuRF complex
Tsp_09779
NuRF complex (fruit fly)
Tsp_09779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
CAF1C_H4-bd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD_LRWD1
EIF3I
Beta-prop_WDR19_1st
MIOS_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
10898420
NCBI-ProteinID:
XP_003374440
UniProt:
E5SPA4
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MLDKCNLNGYTCNLIITKHAVNEFTFCNSLSLHMSDRGNSYIEVYTPNEAWRANVPFLYD
LLIVRQLSHPCMTAQWTPATTPVEDSNVFINHKLLLGTNNETDNFLMLANVQIPSAAALR
SLPPDNDELVGSLFDNDPTRFKIQKRIPHPGEVNCIKHMPHFPQYVATKSMNGDIYLFDC
NKYPENSEFIVFVMNFLHCCACNSGRKTDSEVPPEARLCGHPGEGYGLSWNPGNAGYLLS
SAEDKMIFLWDVKSVVSPNSVLEPIETFTGHEKGVQDVQWHFFNENVFGSVGDDEKLMLW
DTRLSGTISAMLPIHAHEAEINCLAFSPLREHMLATGSADKTIALWDLRNMTGKFHVLTA
HTDEVLKVQWAPFNEAILATSASDSRVNIWNLADLGVEQSADDNLFGPSELFFVHGGHPG
EIGDISWNPVEPWTICSVDTDNMVQCWQIADSIRVG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacaagtgcaatctgaacggatatacttgtaacttaataatcacaaaacatgct
gtaaatgagtttacattttgtaacagcttaagtctacacatgtctgaccgtggaaattcc
tatattgaagtatatactccaaatgaagcgtggagagctaatgttcctttcttgtacgat
ttgttaatagttcgtcagctttctcatccgtgcatgacagcgcagtggacaccagctact
acgccagtggaagattccaacgtttttatcaatcacaagctgttacttggaacgaataat
gaaacggacaattttttgatgctagccaatgtgcaaataccaagcgctgctgctctaaga
tcgctacccccagataatgatgaattagtaggaagcttgtttgataacgatcctactaga
tttaaaatacaaaagcgtatccctcaccctggtgaagtgaactgtattaagcacatgcct
cattttccccagtatgttgccacaaagtcgatgaatggagatatttatctttttgattgc
aataaatatccagaaaattcagaatttatcgtgtttgtaatgaattttttacactgctgt
gcttgtaacagtggtagaaaaactgacagtgaagttccacctgaggcacgactgtgtggt
catcctggtgaaggttacggtttgtcgtggaatccaggaaatgctggctatttgctttct
agtgcagaagataaaatgatatttctttgggatgtgaaatcagttgtaagtcctaacagc
gtattagaacccatagaaacgttcactggtcacgaaaaaggagtccaagatgtccaatgg
catttttttaacgaaaatgtgtttggttctgttggcgacgatgaaaagcttatgttgtgg
gatacgcgtttgagcggcacaatttcagcaatgcttccaatacatgcgcatgaagctgaa
atcaattgtctggctttcagtccgttgcgtgagcacatgttggctactggatcggctgac
aaaaccattgcattatgggatttgagaaacatgaccggcaagtttcatgtgcttacggca
catactgacgaagttcttaaggtacaatgggcacctttcaatgaggcaatccttgctaca
tccgcttcagacagtcgagtcaatatttggaatttagctgatctgggtgttgaacagtcc
gcagatgataatctctttggaccgtcggagttattttttgtgcatggtggtcatccggga
gaaattggtgatattagttggaaccctgtcgaaccttggacaatttgttccgttgatact
gacaacatggtgcaatgttggcaaattgctgacagcatacgcgttggctaa
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integrated database retrieval system
