Trichinella spiralis: Tsp_09872
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Entry
Tsp_09872 CDS
T01609
Name
(RefSeq) putative helix-hairpin-helix motif protein
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tsp_09872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_09872
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
Tsp_09872
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Tsp_09872
Prokaryotic type
Tsp_09872
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
NUDIX_4
HHH
PG_binding_2
RecR_HhH
Motif
Other DBs
NCBI-GeneID:
10907889
NCBI-ProteinID:
XP_003370658
UniProt:
E5SXL3
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MVSDIGLLPDNNYGQLYRFSYKGCKVSDLPHEKMLTKICITKKPPEEVKSSKFCKCANIK
LEANKMKIAKEEMNICKIHFFDEKVIPNFRNILLSWYECNCRSLPWRCLVKNPTLDRNTK
AYYVWVSEIMCQQTQVATVKDYFERWIEKWPSVVDLTETSLEEVNKIWSGLGYYSRAKNL
YEAAKIIRLSKNGKIPQTAEELEKLPGVGRYTACAISSIAFGERKATVDGNIQRVLSRML
CVGENPTSRIVKDHLWKIADNAICSDRPGDFNQALMEIGSLGVQNYPGRKVRKPSKKENK
TVIFMSRSIDNKFLCIKRLDSGLLSGLWEILVIDGVIVEKHLPESVEKKFKLKMIGTLNF
CGTIFHKFSHIDCTYHISCCKVRQLRSKAAGSESNCLVQWMDLGTFEKAGISTAMKKMLH
RVPAGRRPFKNPLFRAAMYVLFGVGGGLYIVWPYIYKKANHHQLHFAFRYLHQCISAEVA
FFQMLDTS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcgatatcggattgcttccagacaacaactatggtcagctatatcggttttca
tataaagggtgtaaagtatccgatttaccacatgaaaaaatgctgactaaaatttgtata
actaaaaaaccacccgaagaagtaaaatcaagcaaattttgcaaatgcgcgaacattaaa
ttagaagctaataaaatgaaaatagcaaaggaagagatgaatatctgcaaaattcacttt
tttgatgaaaaagtgatacctaattttcgcaatattttgctttcttggtatgaatgcaac
tgtcggtcattaccatggcgctgtttagtaaagaacccaactttggatcgaaacaccaaa
gcatattatgtttgggtttcagaaattatgtgtcagcaaacacaagtggccactgttaaa
gattactttgaacgttggattgaaaaatggccgagtgttgttgatttgactgagacgtct
ttagaagaagtgaataaaatttggtccggcttgggttactattcccgcgctaagaatttg
tacgaagcagcaaaaataattcgcctatcaaaaaatggaaaaataccacaaactgccgaa
gagttggaaaagctgccaggcgttggtcgttatactgcatgtgcaatttcatcaattgca
tttggcgagagaaaagctaccgtcgatggtaatattcaacgcgtgttgtcgcgtatgctt
tgtgttggtgaaaatccaacaagcagaattgtgaaggatcatttatggaagattgctgat
aatgcaatatgctcagatcgtccaggagattttaatcaagcattaatggaaattggatcg
cttggagtgcagaattatcctggtcgtaaagtgaggaaaccatccaagaaggaaaacaaa
acggttatatttatgtcgcgcagtatagataataaatttttatgcatcaaaaggctcgat
tcggggttattaagtggtctctgggaaattcttgtaattgacggagtaattgtggaaaaa
catttgcccgagtcggtagagaaaaaattcaaattaaaaatgattggtactttgaatttc
tgtggaacaatatttcataaattttcacatatcgattgcacgtatcatattagctgttgc
aaagtgaggcagttgcgttcaaaggctgcgggcagtgaatcgaactgtctggtgcaatgg
atggatttgggcacttttgaaaaggcaggtatttctactgctatgaaaaagatgttgcat
cgtgtgcctgctggtcggagaccttttaaaaatccattatttcgtgcagccatgtacgtt
ttgtttggagttggcggtgggttgtatattgtctggccgtacatttacaaaaaagcgaat
caccatcagttacattttgcatttcgatatttacatcagtgtataagtgccgaggttgcc
ttttttcaaatgttggacaccagctaa
DBGET
integrated database retrieval system
