Trichinella spiralis: Tsp_09896
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Entry
Tsp_09896 CDS
T01609
Name
(RefSeq) putative ATPase, AAA family
KO
K14571
ribosome biogenesis ATPase
Organism
tsp
Trichinella spiralis
Pathway
tsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Tsp_09896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_09896
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
Tsp_09896
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_16
AAA_14
AAA_5
AAA_22
TIP49
AAA_2
AAA_28
RNA_helicase
DDE_Tnp_1_7
IstB_IS21
Mg_chelatase
ABC_tran
AAA_33
AAA_17
NPHP3_N
nSTAND3
ATPase_2
Parvo_NS1
Rad17
AAA_18
TsaE
NB-ARC
DUF815
Viral_helicase1
ATP-synt_ab
Skp1
Imm30
Motif
Other DBs
NCBI-GeneID:
10907913
NCBI-ProteinID:
XP_003370682
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MNSRLSNFYKTNSASLANANMPLNIDSNQKNFNQHSSKGKYARKRKLREDKKRNSPEMSD
NFNVFEDMIEIKRPRITFHDIGGCEHQLTEVCKFMFHMMHPEVYEKLGIRPPRGFLLYGP
PGCGKTLLAHAIAGEFELPLIKITATEIVSGISGDSEKKIRNLFTKAILTAPCILFIDEI
DSITPRRDVAQRDMDRRIVSQLLACIDDLENSDNHVLFIGATNRVESMDPALRMAGRFDR
EIAFGMPDELSRIKILEVVCRGVNLSGCFDFGHLARLCPGFVGADLKALVREACICSIKR
VFTSVLNDGQSCVDDCTIVSDSSKLPSNVSTAGSSWNINSELKNRTIIVDWLKSGRQCSE
SALSNLSVKMEDFELALKHIQPSAKREGFATVPDVTWNDVGALDSVREELQWSILVREIF
LYPIKWNREFSLMGLGGRAQGILLFGPPGCGKTLLAKAIANESGINFISVKGPELLNMYV
GESERAVRQVFQRAKCSAPCVIFFDEIDALCPRRAQSDSSGVARLVNQLLTEMDGIECRR
EVFIMAATNRPDIIDPAVLRPGRLDKALYVGLPNEEDRVSILRAITKNGTTPPMHEEIDF
KQLSNDKRCEAFSGADLQHLVREASVEALREYFIIQNDHTEKDKAVPELLVRLKHFDMAL
SKVKPSISVKSRLVKKGVNPKINTINWICDKENGYTLKCLLYTGRSGLASTNVGQLAQPF
VNSNKNVYMDCYFTSYSTVQHLLEHGLTAAIGTVFAHVCRDVLACSCKAARRDLLLYISC
L
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaattctcgattatcaaatttttacaaaacgaattcagcatctttggcaaatgcgaac
atgccgttaaatattgacagcaaccaaaaaaattttaatcagcattcaagtaagggaaaa
tatgcaagaaaaagaaagttacgggaagacaagaagcgtaattcccctgaaatgtcagat
aattttaacgtttttgaagatatgattgaaataaagcgaccaagaataacatttcatgac
atcggtggttgtgagcatcagttgacagaagtatgtaaattcatgttccatatgatgcat
cccgaggtgtatgaaaaacttggaattcgtccacctcgagggtttttactctacggtcca
ccaggatgcgggaagacgttgttagctcatgcgattgcaggagaatttgaattaccttta
atcaaaattactgcaactgaaatcgtatccggcataagtggtgattccgagaagaaaatt
cgcaatttattcaccaaagcaattcttactgcgccttgcattcttttcattgatgagatt
gactccattacaccacgacgagatgttgctcagcgtgacatggacagaagaattgtttcg
cagcttttggcttgcattgatgatttggaaaatagtgataatcatgttttgttcatcgga
gcaacgaacagggtagaatcgatggatccagctctgcgtatggctggtcggtttgatcgt
gaaattgcatttggcatgcctgatgaattgagccgtataaaaattctcgaagtggtttgt
cggggtgtaaatttgagcggttgctttgattttggccatttggctcgcttgtgtccagga
tttgttggtgccgatttgaaagcattggtacgtgaagcgtgcatttgttcaataaaaaga
gtgtttacttctgttttgaacgacgggcaaagttgtgttgatgactgtacgattgtctca
gacagtagtaagcttccgtcgaatgtgtcaacggccggatcaagttggaatattaattca
gaattgaaaaatcgtacgattattgttgattggctgaaaagtggacggcagtgcagcgaa
agtgccttgagtaacttgtccgtaaaaatggaagattttgagttagcattgaaacatatt
caaccttcggccaaacgtgaaggttttgctacagtaccagacgtgacttggaacgacgta
ggcgctttggattcagtacgcgaagaattgcagtggtctatattggtgcgtgagattttt
ctttatccaattaaatggaacagagaattttcgttgatgggtttgggtggtagagcgcaa
ggaattttgctgtttggccctcctggttgtggaaagactttgttagcaaaagcaattgca
aacgaatctggtataaattttatttctgtaaaaggaccagaactgctcaatatgtacgta
ggtgaaagtgaacgtgcagttcggcaagttttccaacgtgccaagtgttctgcaccgtgc
gttatatttttcgacgaaatcgatgccctttgtccacgcagggcacagtccgatagcagt
ggagtagccaggcttgtgaatcagttgctgactgagatggatggaattgaatgtcgtcgg
gaagttttcatcatggcggcgacaaacagaccagatattattgatccggctgtattacgc
cctggtcgacttgataaagcactttatgttggtttgccgaacgaggaggatcgtgttagc
atcctacgtgctataacaaaaaacggtacaacacctccaatgcacgaggaaattgatttc
aaacagctttccaatgataaacgttgcgaagcgttcagcggtgcagatttgcagcattta
gttcgtgaagcatccgtggaagctcttcgagagtattttattattcaaaatgaccacaca
gaaaaagacaaagcggtacctgaactgctagttcgactaaagcacttcgatatggcactt
tcaaaagtgaaaccgtcaatctctgtcaagagtagattagtcaaaaagggtgtcaaccca
aagataaatacgatcaactggatatgtgacaaggagaatggttatactctgaaatgtttg
ttatatactggcagaagtggtctagcaagcaccaatgttgggcaattggcacagccattt
gtgaactctaacaaaaacgtttatatggactgttattttacatcatattccactgtgcaa
catcttcttgagcatggccttacagctgctattggtacagtgtttgcacatgtttgccgt
gatgttctagcatgttcgtgtaaagcagcacgacgtgatcttttactctacattagctgc
ttatga
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